SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37909

Length: 1399 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37909

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein L2-like [Solanum tuberosum]	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18020.1	EMB2296 Ribosomal protein L2 family chr2:7837151-7838160 FORWARD LENGTH=258	87%
RefSeq	Arabidopsis thaliana	NP_179393.1	60S ribosomal protein L8-1 [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002310303.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ62

Fln msg:

Fln protein: MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDYGERNGYIRGIITDVIHDPGRGAPLCKVTFRHPFRYKHQKELFVAAEGMYSGQFVYCGKKANLTVGNVLPLRSIPEGAIVCNVEQNVGDRGSFARASGDYAIVVSHNIDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAASAAAKMDN*

Protein Length: 261

Fln nts: CTTCTTTTTTCCAACGTGTAGATGTCGAATTAAGGCGGGGTTATGTTAATTATTGTAAATTCACACAATACAAAATTAGGGTTTATGGGGTTTGAGTAAATGTTCCACCCACATTAGGGTTAGGGTTTATACCCAACTAGGGTTTGTAGGGGATTCGCATCTTGACGAAACCCCTTAGCCATATCTGTTACTTCCATTTTCGGAGGCGCAACAGATCCAAACTCTGTGTAGTGATCTGCTCTGGTCTGCAGAC_-_ATGGGTCGCGTTATTCGTGCACAGAGAAAGGGAGCAGGCTCCGTGTTCAAATCCCACACCCATCACAGGAAGGGACCTGCACGTTTCAGAAGCCTCGACTATGGCGAGCGCAATGGCTACATTAGGGGAATTATCACGGACGTCATACACGATCCTGGCCGCGGCGCTCCCCTCTGCAAGGTGACCTTCAGGCACCCATTCCGTTACAAGCATCAGAAGGAGCTCTTCGTAGCGGCCGAAGGTATGTACTCGGGACAGTTCGTTTACTGCGGAAAGAAGGCCAATTTGACTGTGGGTAACGTGTTGCCCTTGAGGTCTATTCCGGAGGGAGCCATTGTCTGCAACGTGGAACAGAATGTCGGCGATCGGGGTTCGTTTGCTAGGGCTTCTGGAGACTACGCCATCGTCGTCAGCCACAATATCGATAACGGCACTACCAGGGTGAAGCTTCCCTCTGGAGCTAAGAAGATTGTGCCAAGTGGTTGTAGAGCTATGATTGGTCAAGTTGCTGGAGGTGGAAGAACAGAAAAACCAATGCTCAAGGCTGGCAATGCATACCACAAATACAGGGTCAAAAGAAACTCTTGGCCCAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCTAGTACTGTACGTCGTGATGCACCACCAGGGCAAAAAGTTGGGCTTATTGCTGCCAGAAGAACTGGTCGTCTGCGTGGACAAGCTGCATCAGCAGCTGCAAAGATGGACAACTAA___TCTTAGTTCATTTCTATTTTGCAAGGATTTCATTGTCTTATTTTGGTGTTTTATTTTGTCGTAATGTGATTTTTCAAGGGTTTTGATCCTTTTTATTCAGGTAGTAGAAGCAATTGTTTACAGAGGCCAGGAAACTTATAACTGCATACCCTTATTTTCGTTGTTTATTTAACTTTTATGTTGCAACGATATATGTCAACCAAGTAATAATCTCAGCTTTCTTTTACATGATTGTCTATAGGTGAGCAGCTTGCTCACACAACTGTATGATTTTTTAGACTTGCAATAATTATACGATATATGATAGTTTACCACAAAACTTATTAATATATTTTACCACAGAACTTGTTAATATATCAGTTGTAA

Fln Alignment:

Contig37909___MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDYGERNGYIRGIITDVIHDPGRGAPLCKVTFRHPFRYKHQKELFVAAEGMYSGQFVYCGKKANLTVGNVLPLRSIPEGAIVCNVEQNVGDRGSFARASGDYAIVVSHNIDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAASAAAKMDN
C0PQ62_______________MGRVIRAQRKGAGSVFTSHTHHRKGPARFRSLDYGERNGYIRGIVTDVIHDPGRGAPLCKVTFRHAFRYRHQKELFVAAEGMYTGQFVYCGKKANLTVGNVLPLRSIPEGAVVCNVEQHVGDRGSFARASGDYAIVVSHNPDNGTTRVKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAASAAAKTDN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
611		80	20		1.0
668		88		11	0.923564
1059			75	25	1.0
1086	86	13			0.999973
1183		72		27	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain