SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37887

Length: 1457 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37887

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to 60S ribosomal protein L35 [Solanum lycopersicum]	-	-	5.00264e-43	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	60S ribosomal protein L35	-	-	1.547e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.5.1.6-	-	1.253e-07	-

Source	Gene names
Sma3	At2g39390; At3g09500; At3g12070; At3g55170; At5g02610; At5g12210; B1206D04.28; CHLREDRAFT_147004; CHLREDRAFT_190175; F11F8_7; F12L6.5; GSVIVT00023031001; GSVIVT00026114001; GSVIVT00029522001; MICPUCDRAFT_44694; MICPUCDRAFT_49485; MICPUN_107597; OJ1003_F04

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	Ribosomal protein L29	IPR001854	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39390.1	Ribosomal L29 family protein chr2:16450803-16451762 REVERSE LENGTH=123	88%
RefSeq	Arabidopsis thaliana	NP_195881.1	60S ribosomal protein L35-4 [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002308483.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ49

Fln msg:

Fln protein: MARIKVHELRNKSKSELLSQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQSQRSALREAYKKKKYLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPMRKYAVKV*

Protein Length: 125

Fln nts: GGTCCCTGAGGACTGCGAATCATATAGACAGGTCTCCATCGCATCTCGGTTGCAGACTTGGAACAAAGAACAAGAAATACGGAAAGAACAAGATATTCGGATCTGTGGCAGTAATCGGACCTCACTGGAACAGTACATACCATCACAGTTAGCCAAGAACATCAAACAAATGGGTGAATTGGAAATAGAGAAGCATACCCAGTTCATAACGTCTGTTGAAAAGAAAAAGGATTTTGATTCAATGGTAATGGAGCACTTGAGAATGAGTGGGGCATACTGGGGACTGACAGCACTGGATCTCATGGGGAAGCTGGATGCTGTGAATCAAAAGGAAGTTGTTTCTTGGGTCTTGCAATGCCAGCATGATTGTGGTGGATTCAGTGGAAATGTTGGCCATGATCCTCATATTCTGTATACCTTGAGTGCTGTCCAAATATTGGCCCTGCTTGACAAGTTAGACGCCATTGATGCAGACAAGATATCAGCTTATATTGTGGGATTACAGCAGGAAGATGGATCTTTTGCAGGCGAGGAGCGGAGCGGAGAGGAGAGCAGAGGAGCCGAGGCGCAGAGCGGACTTGCGAAAAGATTTGAATCGAA_-_ATGGCCAGGATTAAGGTTCATGAGCTCCGCAACAAGAGCAAATCAGAGCTGTTAAGCCAGCTCAAGGAGCTCAAGGCTGAGCTTGCCTTGCTCAGAGTTGCAAAGGTCACTGGAGGAGCGCCCAACAAACTCTCTAAAATCAAGGTCGTGAGGCTATCAATAGCTCAGGTTCTGACTGTGATTTCTCAGAGCCAGCGATCTGCATTAAGAGAAGCATACAAGAAAAAGAAGTACCTGCCTCTTGATTTGCGTCCCAAGAAGACTCGTGCTATCAGGCGACGCCTTACCAAGCATCAGGCATCATTGAAGACTGAGAGACAGAAAAAGAAAGAGATGTATTTTCCAATGAGAAAGTATGCAGTCAAGGTGTAA___AGCATAGAATTTGAGCTTTCATGCAATTTTTTGTTACTCGCGGGATGATTTTGCCTATTATATTTCCATCCAAGTTTTTGGCAAATTTCGATTTGCATCAGAATTCAAGTTATGATAGGTGTTCTTTCGCTTTTGAGCAGAATTCAAGTTATGATAGGTGTTCTTTCGCTTTTGAGCAGTTGATATTGTTTATCTTTTATTTCTCTTGAATTGCAAACATATTCTAATGCAATGAGTGGATTATTATATTGTGGTATTTCCATGTTGAACTCATATATGAAATGAGTGTAATTTGAGTGGTAGCACTAGGATATTTTCACTGTTAATAGCTTTTCATCAACATAGTTAATTTGACTCCGCAAATGATCTTGCGAGGCTAAGTATGACTTCGACACAGTGAAAACATGAAATATTTGTGACAAAAACTGGCTAAGCAAAAATAACTAATTTAGTTGGCAAATGAAAACATTGTCAAAAGCTTGGTC

Fln Alignment:

Contig37887___MARIKVHELRNXXXXXXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQSQRSALREAYKKKKYLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPMRKYAVKV
A9NQ49_______________MARIKVHELRNKSKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQNQRSALREAYKKKKYLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPMRKYAVKV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
611	25			75	0.996473
613	75		25		0.996473
614	75		25		0.996473
683	25			75	0.996473
704	83			16	0.994512
707			16	83	0.994512
711			83	16	0.994512
776		90		10	0.90298
777			10	90	0.90298
779			10	90	0.90298
860	88		11		0.923564
914	65			34	1.0
1022	84			15	1.0
1040	16		83		1.0
1060		7		92	1.0
1217	4	2		93	1.0
1218	93	4	2		1.0
1227	6	4	1	88	1.0
1228	88	7	1		1.0
1243		2		97	0.969538
1299	5	2		91	0.99441
1301	11		88		1.0
1312	86		13		1.0
1330		80	19		1.0
1370		13		86	0.999973
1394	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain