SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37886

Length: 2427 nt

UniGene Fasta

>sp_v3.0_unigene37886
CGGAAAACGTTTATAGTTCAGGTTGACAGCAATTCAAAACCGGCAGTCTTTCCCACTCCAGAGCAATGGTACGCATCAATCGTTGCTTCTGTCAAGGCCACCGTCAAAACGGAATCGGGTTCTTTTATGGATGCGCAGCATGATGATGCACTGCTGCTTTATGTTTATAGCACCGTTTTGCAAGGATTCTCCGCAATGCTAATGGAGCTGGAAGCCGTGGAGATGCAGAGAACACCGGGAGTTCTCGCCATTTTTCCCGATCGCGTATTACAACTTCACACGACGCGAACCCCGCACTTCCTTGGCCTCGAGACGCCCACTGCAAGCCACTTGTGGGCAGAATCCAACTACGGCTCCGATGTAGTGATCGGTTTGATTGATACCGGCATTTGGCCGGAACGGCGGAGCTTCAGAGATCACAACATGGGTCCCGTTCCGATGCGCTGGAAAGGCGAATGCGAGAGTGGGGTCAGATTTTCCAAGTCCAACTGCAACAAGAAGTTGGTTGGAGCTCGGTATTTCTACAAAGGGTATGAAGCGTCGGCTGGTCCGTTGAATGAGACAGTGGAGATCCGTTCAGCGCGGGACTCAGAAGGCCATGGCACACACACCGCTTCCACCGCCGCGGGCGATTTCGTTGGGGGAGCCAACCTGATGGGGTACGCGCCGGGAGTCGCCAAAGGTATGGCGCCCAAAGCACGAATTGCGGTCTACAAGGCTTGCTGGCTCTATGGCTGCGCGAACTCCGACTTGCTCTCTGCCTTCGATAAGGCGTTAGAGGACGGAGTGGATGTTATATCGCTGTCAGTTGGGTCAGATGCGCGTCCTTATGTTAATGATACCATTGCGATCGGTGCCTTCGAGGCGGCACGGCGGGGAGTGTTCGTGTCAGCATCGGCAGGAAACAGCGGCCCCGGTAATTATACCGTTAGTAACGTGGCTCCCTGGATCACCACGGTTGGGGCCGGCAGTCTGGATCGCAACTTTACGGCAGAAGTCCACCTCGGCAACGGGACAGTTATCCCAGGGGTATCGTTGTACAGTGGAAAGGGATTGAGCTCGCGATATCTGGTGCCTCTCGTGTATAGTGGGAACGCATCTCGCACGAACGATTCTTCTAGCTATCTAGCTATGTACTGCATTCCAGGATCGTTGGATCCCAAGGTTGTCAAGGGCAAGATCGTGCTATGTGAGAATGGGAATGGTGGAGTTAAGGAGGGGATAGTGGTTCGGAAAGCCGGCGGCGTGGGAATGATAGTGAATGGCGATGGGTTCGTTGGTGAAGCGTATACGCTGCCCGCATCTAATGTCGATCAGTCTGCCGGCGCGTTGATCCGCCAATACATTCAATCAACCAAAAACCCTACCGCCACCATAACGTTCCGTGGCACTCAACTCGGAGTCCAGCCGGCCCCTACTGTGGCTTTCTTTTCCAGCAGAGGGCCCAATTACATAACGCCGGAAATTCTCAAACCCGATCTTATAGCCCCTGGCTTGAACATTCTTGCTGCTTGGACCGGTGCGAACAGAGAAGGACAGAGGCGAACGGAGTTCAATATAATATCTGGGACGTCCATGTCATGCCCCCACGTTAGCGGGATCGCTGCATTGCTCAAAGCAGTTCATCCCGAGTGGAGTCCCGCAGCCATCAAATCTGCTCTCATGACGACTGCTTACACTCATGACCTTAAGATTCAAGAGACGATGCTTGATGAAGCCACCGGAATGTCTTCAACCCCTTTTGTTTTTGGCGCAGGTCATGTGGATCCCGAGAGAGCTGCAGATCCGGGGCTGATTTACGATCTGGGCGTCAATGACTATGTCGCCTTTCTTTGCACTATTAATTATACCGCGCAGGCCATCAGGATTATCACTAATACAAATGTTACCTGCCCTGCTCATGGAGGACAGCTTGGAAATTTCAATTACCCAGCACTTTCTGCTGTCTTCAATCTGAACCGGTCTTCTGCCCTGTCGACAAGCTTCAGCAGAACAGTCACCAATGTCGGTCCTCCCGTGTCAACTTACAAAGCCACAGTGATAGCCCCAGTAGGGGCGGTAGTGAGAGTGAAGCCAAGAATACTGAGATTTACCAAGAAGGACGAGAAGCTAAGCTTCGTGATGAACGTCAAAGCCAAGTCTCTGCATATTCAGCAGGGAGCATCAGTAGGAACTCATGGGCTGTTGTCTTGGAGTGATGGACAACACGTTGTACAAAGCCCAATTTTAGTCACCGTAGAAAACATTCCTAGTAACTGAAGCGCGCCTGAAACGCGTTCTCTATGTAATGATCCATCGAAGTTTCCTACCTCTACGTACTTGCAGGAATAAAACAATGTAATAATGATAGACAGTTGATTTCACCCTTATCAGTCATATTTAACTGATATCCTTAATATACAATATTTCAAACATCCACTCCCATCA

Ace file of the UniGene sp_v3.0_unigene37886

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	subtilisin-like serine protease [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Sma3	Subtilisin-like protease	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	6.625e-11	-
Sma3	Cucumisin.	EC:3.4.21.25	-	0.0	-

Source	Gene names
Sma3	46C02.13; AIR3; ARA12; ASP48; AT4g34980; At1g01900; At1g04110; At2g04160; At2g05920; At3g14067; At3g14240; At4g34980; At5g51750; At5g59810/mmn10_30; At5g67360; F20D22.12; F22M8.3; GSVIVT00001051001; GSVIVT00001053001; GSVIVT00001054001; GSVIVT00001055001;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	external side of plasma membrane	GO:0009897	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	extracellular matrix	GO:0031012	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	GMP synthase (glutamine-hydrolyzing) activity	GO:0003922	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	GMP biosynthetic process	GO:0006177	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	plant-type cell wall modification	GO:0009827	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3	stomatal complex morphogenesis	GO:0010103	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-
Sma3	mucilage metabolic process involved seed coat development	GO:0048359	Biological Process	-
Sma3	mucilage extrusion from seed coat	GO:0080001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3		IPR000991	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR011702	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3		IPR018318	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G14240.1	Subtilase family protein chr3:4741637-4743964 REVERSE LENGTH=775	52%
RefSeq	Arabidopsis thaliana	NP_566483.1	Subtilase family protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002331218.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPS1

Fln msg: your sequence is longer than subject: 753 - 690

Fln protein: RKTFIVQVDSNSKPAVFPTPEQWYASIVASVKATVKTESGSFMDAQHDDALLLYVYSTVLQGFSAMLMELEAVEMQRTPGVLAIFPDRVLQLHTTRTPHFLGLETPTASHLWAESNYGSDVVIGLIDTGIWPERRSFRDHNMGPVPMRWKGECESGVRFSKSNCNKKLVGARYFYKGYEASAGPLNETVEIRSARDSEGHGTHTASTAAGDFVGGANLMGYAPGVAKGMAPKARIAVYKACWLYGCANSDLLSAFDKALEDGVDVISLSVGSDARPYVNDTIAIGAFEAARRGVFVSASAGNSGPGNYTVSNVAPWITTVGAGSLDRNFTAEVHLGNGTVIPGVSLYSGKGLSSRYLVPLVYSGNASRTNDSSSYLAMYCIPGSLDPKVVKGKIVLCENGNGGVKEGIVVRKAGGVGMIVNGDGFVGEAYTLPASNVDQSAGALIRQYIQSTKNPTATITFRGTQLGVQPAPTVAFFSSRGPNYITPEILKPDLIAPGLNILAAWTGANREGQRRTEFNIISGTSMSCPHVSGIAALLKAVHPEWSPAAIKSALMTTAYTHDLKIQETMLDEATGMSSTPFVFGAGHVDPERAADPGLIYDLGVNDYVAFLCTINYTAQAIRIITNTNVTCPAHGGQLGNFNYPALSAVFNLNRSSALSTSFSRTVTNVGPPVSTYKATVIAPVGAVVRVKPRILRFTKKDEKLSFVMNVKAKSLHIQQGASVGTHGLLSWSDGQHVVQSPILVTVENIPSN*

Protein Length: 754

Fln nts: CGGAAAACGTTTATAGTTCAGGTTGACAGCAATTCAAAACCGGCAGTCTTTCCCACTCCAGAGCAATGGTACGCATCAATCGTTGCTTCTGTCAAGGCCACCGTCAAAACGGAATCGGGTTCTTTTATGGATGCGCAGCATGATGATGCACTGCTGCTTTATGTTTATAGCACCGTTTTGCAAGGATTCTCCGCAATGCTAATGGAGCTGGAAGCCGTGGAGATGCAGAGAACACCGGGAGTTCTCGCCATTTTTCCCGATCGCGTATTACAACTTCACACGACGCGAACCCCGCACTTCCTTGGCCTCGAGACGCCCACTGCAAGCCACTTGTGGGCAGAATCCAACTACGGCTCCGATGTAGTGATCGGTTTGATTGATACCGGCATTTGGCCGGAACGGCGGAGCTTCAGAGATCACAACATGGGTCCCGTTCCGATGCGCTGGAAAGGCGAATGCGAGAGTGGGGTCAGATTTTCCAAGTCCAACTGCAACAAGAAGTTGGTTGGAGCTCGGTATTTCTACAAAGGGTATGAAGCGTCGGCTGGTCCGTTGAATGAGACAGTGGAGATCCGTTCAGCGCGGGACTCAGAAGGCCATGGCACACACACCGCTTCCACCGCCGCGGGCGATTTCGTTGGGGGAGCCAACCTGATGGGGTACGCGCCGGGAGTCGCCAAAGGTATGGCGCCCAAAGCACGAATTGCGGTCTACAAGGCTTGCTGGCTCTATGGCTGCGCGAACTCCGACTTGCTCTCTGCCTTCGATAAGGCGTTAGAGGACGGAGTGGATGTTATATCGCTGTCAGTTGGGTCAGATGCGCGTCCTTATGTTAATGATACCATTGCGATCGGTGCCTTCGAGGCGGCACGGCGGGGAGTGTTCGTGTCAGCATCGGCAGGAAACAGCGGCCCCGGTAATTATACCGTTAGTAACGTGGCTCCCTGGATCACCACGGTTGGGGCCGGCAGTCTGGATCGCAACTTTACGGCAGAAGTCCACCTCGGCAACGGGACAGTTATCCCAGGGGTATCGTTGTACAGTGGAAAGGGATTGAGCTCGCGATATCTGGTGCCTCTCGTGTATAGTGGGAACGCATCTCGCACGAACGATTCTTCTAGCTATCTAGCTATGTACTGCATTCCAGGATCGTTGGATCCCAAGGTTGTCAAGGGCAAGATCGTGCTATGTGAGAATGGGAATGGTGGAGTTAAGGAGGGGATAGTGGTTCGGAAAGCCGGCGGCGTGGGAATGATAGTGAATGGCGATGGGTTCGTTGGTGAAGCGTATACGCTGCCCGCATCTAATGTCGATCAGTCTGCCGGCGCGTTGATCCGCCAATACATTCAATCAACCAAAAACCCTACCGCCACCATAACGTTCCGTGGCACTCAACTCGGAGTCCAGCCGGCCCCTACTGTGGCTTTCTTTTCCAGCAGAGGGCCCAATTACATAACGCCGGAAATTCTCAAACCCGATCTTATAGCCCCTGGCTTGAACATTCTTGCTGCTTGGACCGGTGCGAACAGAGAAGGACAGAGGCGAACGGAGTTCAATATAATATCTGGGACGTCCATGTCATGCCCCCACGTTAGCGGGATCGCTGCATTGCTCAAAGCAGTTCATCCCGAGTGGAGTCCCGCAGCCATCAAATCTGCTCTCATGACGACTGCTTACACTCATGACCTTAAGATTCAAGAGACGATGCTTGATGAAGCCACCGGAATGTCTTCAACCCCTTTTGTTTTTGGCGCAGGTCATGTGGATCCCGAGAGAGCTGCAGATCCGGGGCTGATTTACGATCTGGGCGTCAATGACTATGTCGCCTTTCTTTGCACTATTAATTATACCGCGCAGGCCATCAGGATTATCACTAATACAAATGTTACCTGCCCTGCTCATGGAGGACAGCTTGGAAATTTCAATTACCCAGCACTTTCTGCTGTCTTCAATCTGAACCGGTCTTCTGCCCTGTCGACAAGCTTCAGCAGAACAGTCACCAATGTCGGTCCTCCCGTGTCAACTTACAAAGCCACAGTGATAGCCCCAGTAGGGGCGGTAGTGAGAGTGAAGCCAAGAATACTGAGATTTACCAAGAAGGACGAGAAGCTAAGCTTCGTGATGAACGTCAAAGCCAAGTCTCTGCATATTCAGCAGGGAGCATCAGTAGGAACTCATGGGCTGTTGTCTTGGAGTGATGGACAACACGTTGTACAAAGCCCAATTTTAGTCACCGTAGAAAACATTCCTAGTAACTGA___AGCGCGCCTGAAACGCGTTCTCTATGTAATGATCCATCGAAGTTTCCTACCTCTACGTACTTGCAGGAATAAAACAATGTAATAATGATAGACAGTTGATTTCACCCTTATCAGTCATATTTAACTGATATCCTTAATATACAATATTTCAAACATCCACTCCCATCA

Fln Alignment:

Contig37886___RKTFIVQVDSNSKPAVFPTPEQWYASIVASVKATVKTESGSFMDAQHDDALLLYVYSTVLQGFSAMLMELEAVEMQRTPGVLAIFPDRVLQLHTTRTPHFLGLETPTASHLWAE-SNYGSDVVIGLIDTGIWPERRSFRDHNMGPVPMRWKGECESGVRFSKSNCNKKLVGARYFYKGYEASAGPLNETVEIRSARDSEGHGTHTASTAAGDFVGGANLMGYAPGVAKGMAPKARIAVYKACWLYGCANSDLLSAFDKALEDGVDVISLSVGSDARPYVNDTIAIGAFEAARRGVFVSASAGNSGPGNYTVSNVAPWITTVGAGSLDRNFTAEVHLGNGTVIPGVSLYSG-KGLSSRYLVPLVYSGNASRTNDSSSYLAMYCIPGSLDPKVVKGKIVLCENG-NGGVKEGIVVRKAGGVGMIV-----NGDGFVGEAYTLPASNVDQSAGALIRQYIQSTKNPTATITFRGTQLGVQPAPTVAFFSSRGPNYITPEILKPDLIAPGLNILAAWTGAN-----REGQRRTEFNIISGTSMSCPHVSGIAALLKAVHPEWSPAAIKSALMTTAYTHDLKIQETMLDEATGMSSTPFVFGAGHVDPERAADPGLIYDLGVNDYVAFLCTINY
C0PPS1_______________KKTYVVHMAKSQMPAGFTSHEHWYASAVKSVLS------------EEEEPSILYNYDDAFHGFAARLNAAQAEALEKTHGILGIYPETVYELHTTRTPQFLGLET-AESGMWPEKANFGHDVVIGVLDTGVWPESLSFNDRGMGPVPAHWKGACESGTNFTASHCNKKLIGARFLSRGYEAAVGPINETAEFRSPRDQDGHGTHTASTAAGAVVLKADLVGYAKGTARGMATRARIAAYKVCWVGGCFSTDILAALDKAVADGVNVLSLSLGGGLEPYYRDSISLGTFGAMEKGIFVSCSAGNGGPDPISLSNVAPWIATIGAGTLDRDFPAYVELGNGLNFTGVSLYHGRRGLPSGEQVPLVYFG--SNTSAGSRSATNLCFAGSLDRKLVAGKMVVCDRGISARVAKGAVVKSAGGVGMILANTDANGEELVADCHLLPASAVGEANGDAIKHYITSTKNPTATIHFGGTVLGVKPSPVVAAFSSRGPNLVNPEILKPDMIAPGLNILAAWTGITGPTGLSDDLRRVKFNILSGTSMSCPHVTGIAALMKGAHPEWSPAAIKSALMTTAYTVD-NMGHKIEDSATANASTPFDHGAGHVDPKSALNPGLIYDISADDYIEFLCSLNY

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
2063	63		36		1.0
2096		53	46		1.0
2124	50	50			1.0
2148	54	45			1.0
2177			45	54	1.0
2202		30	70		1.0
2217		88		11	0.923564
2238	57		42		1.0
2258		33		66	1.0
2293	33		66		1.0
2334	33	66			1.0
2346	33		66		1.0
2363		20		80	0.995493
2368		66		33	0.997452
2369		33		66	0.997452
2372		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain