SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37873

Length: 2590 nt

UniGene Fasta

>sp_v3.0_unigene37873
GAGCTATTAGTTACTTTAGAAACATTGTGGTAGTTCTGGAGTTTTTTTTGCCATTGGGAGCACACAGTGAAACTCTCTGCGTAAGAGGGAAGACGAGATCCAGGCGTCCCATAACCCAACCGGGTTAGATCTAAATCTACAGTGAACAAGATGGGGTATAAGGAAGGCGTCTGGTTCTGCTGGGTGCTCTACTTGGTCGCGGCCTTGGGTACAGTGTTTGCATCAGAGTATGATCATAAGTATCGAGCAAATGATCCTGTTACTTTATGGGTGAACAAAGTTGGCCCTTACAATAATCCTCAAGAAACGTATAACTACTATAGTCTTCCGTTCTGCCAACCAGCTAAAAATCCCACGCATAAGTGGGGTGGGCTTGGTGAGGTTCTGGGAGGAAATGAGCTCATAGACAGCCAAGTTGACATCAAATTTGGAAAAAATGTTGAAAAAAGTCCAATATGCACAATTGAGCTTGATGCTACCAAAGTGAAACAATTTAAGGAAGCTATTGAAAACGCCTACTGGTTTGAATTCTTCATGGATGATCTACCTCTCTGGGGGTTTGTTGGCGAAATTCATCTAGACAAGAGTGATGATCAGAAGCATTTGCTATACACGCACAAGAATATTATTGTGAAAATCAATAATGACCAAATAATTCATGTCAACCTCACTCAGGAGAATCCAAAGCCGCTTATTGCTGGGAAGACACTAGAACTTACCTATTCAGTCCATTGGGTCGAGACCAACATAACCTTTGCCAGGCGTTTTGATGTCTACTTAGACTATCCTTTCTTTGAACATCAGATCCATTGGTTCTCCATCTTCAATTCATTTATGATGGTTATTTTTCTCACGGGTTTAGTCTCAATGATCCTGATGCGGACTCTGAGAAATGACTATGCAAAGTATGCTCGCGAAGAAGATGATTTGGAAAGCCTGGAGAGAGATGTTAGTGAAGAGTCAGGGTGGAAACTTGTTCATGGAGATGTTTTCCGAACACCACGAAACTTGGTCTTGCTGTCAGCATTAGTGGGCACGGGTGCACAACTTGCTATGCTTGTGCTTCTGGTTATCTTGCTGGCAATTGTTGGCATGCTATATATTGGGCGTGGGGCAATTGTCACCACTTTCATTGTCTGCTATGCCCTTACCTCATTTATATCTGGCTATGTGAGTGGAGGACTGTATTCACGTAATGATGGCAAGCACTGGATAAAGTCAATGGTTCTTACGGCATCTCTCTTCCCATTTATGTGCTTTGGCATTGGATTTGTACTGAACATCATTGCCATATTCTATGGTTCTCTGGCTGCCATTCCTTTTGGCACTATGGTGGTTGTCTTTGTAATCTGGGCATTTATATCTTTCCCTCTAGCACTCCTTGGAACGGTTGTTGGAAGGAATTGGAGTGGGGCTCCAAATAATCCTTGTCGTGTGAAGACCATTCCTCGCCCAATTCCAGAAAAGAAGTGGTATCTGACACCAACAGTGGTGTCACTGATGGGTGGTCTGCTTCCCTTTGGGAGTATTTTCATTGAAATGTATTTTGTTTTCACCTCATTTTGGAACTACAAGGTATATTATGTTTACGGCTTCATGTTGCTGGTGTTTTTGATTCTTGTTATTGTGACCATCTGTGTTACAATCGTTGGAACATACTTCTTGCTTAATGCTGAAAATTATCACTGGCAATGGACATCATTCTTCTCAGCCGCATCAACGGCTGCTTATGTGTATCTTTATTCTATATACTATTACCACATGAAGACAAAGATGTCTGGATTTTTCCAGACCAGTTTCTATTTTGGCTACACTCTAATGTTCTGCCTTGGTTTAGGCATCCTTTGTGGGGCTGTTGGTTACCTGGGCTCTACATTGTTTGTAAGAAGAATTTATCGGAATATCAAGTGTGATTGAGGAGAAGTAGATTGGAAACAAAATGAAATATATTTATGCCAGAGCTATTGCAGGGCTTGTTTAAGGCACCTGTTTCTTCCCAGGGAAAAAGGATTATAGTTCCATAGATTCACTCTTTATCCTTGAGCCATTTGTTCAATGCTATTCCTGGGCGTGGCATGCATTTTGTATTACTGAACATTGTAAGTTAGTTCAGTTGTAGCAAAATCACTTACTGTGACTGCAAGTCTTGCATCTCTATTCATTCAAAGCGGTACAAGTACAAGTTCACAAAAAACACTTATAGGAGGGCATTTTTGATTTGCAAGATGACTACTTCTGCCTGCAGATGTTGTTCATTGGGAGGATGGATTTTAGAACCGGGTCCTTATCTAGTAAAGAGTGGCAGAGTGTAGCTATTTTCAAGTTCCAACACCTTTTAAGAGTTCGGAATAGATTTTTATGCAGTTCACTTAGATAGAGTCATTCTGCTTCAGTACCTTTTTAGTGGGCTTTTGCAGATTCATTACTGTCATGCTTTTATGACTGAAATTAACAGTTGAAGATGGCTAGTGGTTTCAGGATATAACTTCAAAAATATTCATCCAATCTTTCAGAAACATTACTGCTTTCCTTAGTTCATGTTTACTTCATTCTAATTTCTTGTTTGGCTTTTTCCTTCTACACCTTGTGC

Ace file of the UniGene sp_v3.0_unigene37873

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transmembrane nine 1 [Arabidopsis thaliana] gb\|AAL48237.1\|AF446365_1 At1g10950/T19D16_13 [Arabidopsis thaliana] gb\|AAK96857.1\| endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana] gb\|AAL36263.1\| putative endomembrane protein EMP70 precusor is	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Sma3	Putative endomembrane protein EMP70 precusor isolog	-	-	-

Source	Gene names
Sma3	At1g10950/T19D16.13; At1g10950;

Source	GOs	Term	Type	e value	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G10950.1	TMN1, AtTMN1 transmembrane nine 1 chr1:3659322-3663622 FORWARD LENGTH=589	86%
RefSeq	Arabidopsis thaliana	NP_563881.1	transmembrane nine 1 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002331462.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKM1

Fln msg:

Fln protein: MGYKEGVWFCWVLYLVAALGTVFASEYDHKYRANDPVTLWVNKVGPYNNPQETYNYYSLPFCQPAKNPTHKWGGLGEVLGGNELIDSQVDIKFGKNVEKSPICTIELDATKVKQFKEAIENAYWFEFFMDDLPLWGFVGEIHLDKSDDQKHLLYTHKNIIVKINNDQIIHVNLTQENPKPLIAGKTLELTYSVHWVETNITFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREEDDLESLERDVSEESGWKLVHGDVFRTPRNLVLLSALVGTGAQLAMLVLLVILLAIVGMLYIGRGAIVTTFIVCYALTSFISGYVSGGLYSRNDGKHWIKSMVLTASLFPFMCFGIGFVLNIIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPTVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILVIVTICVTIVGTYFLLNAENYHWQWTSFFSAASTAAYVYLYSIYYYHMKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSTLFVRRIYRNIKCD*

Protein Length: 590

Fln nts: GAGCTATTAGTTACTTTAGAAACATTGTGGTAGTTCTGGAGTTTTTTTTGCCATTGGGAGCACACAGTGAAACTCTCTGCGTAAGAGGGAAGACGAGATCCAGGCGTCCCATAACCCAACCGGGTTAGATCTAAATCTACAGTGAACAAG_-_ATGGGGTATAAGGAAGGCGTCTGGTTCTGCTGGGTGCTCTACTTGGTCGCGGCCTTGGGTACAGTGTTTGCATCAGAGTATGATCATAAGTATCGAGCAAATGATCCTGTTACTTTATGGGTGAACAAAGTTGGCCCTTACAATAATCCTCAAGAAACGTATAACTACTATAGTCTTCCGTTCTGCCAACCAGCTAAAAATCCCACGCATAAGTGGGGTGGGCTTGGTGAGGTTCTGGGAGGAAATGAGCTCATAGACAGCCAAGTTGACATCAAATTTGGAAAAAATGTTGAAAAAAGTCCAATATGCACAATTGAGCTTGATGCTACCAAAGTGAAACAATTTAAGGAAGCTATTGAAAACGCCTACTGGTTTGAATTCTTCATGGATGATCTACCTCTCTGGGGGTTTGTTGGCGAAATTCATCTAGACAAGAGTGATGATCAGAAGCATTTGCTATACACGCACAAGAATATTATTGTGAAAATCAATAATGACCAAATAATTCATGTCAACCTCACTCAGGAGAATCCAAAGCCGCTTATTGCTGGGAAGACACTAGAACTTACCTATTCAGTCCATTGGGTCGAGACCAACATAACCTTTGCCAGGCGTTTTGATGTCTACTTAGACTATCCTTTCTTTGAACATCAGATCCATTGGTTCTCCATCTTCAATTCATTTATGATGGTTATTTTTCTCACGGGTTTAGTCTCAATGATCCTGATGCGGACTCTGAGAAATGACTATGCAAAGTATGCTCGCGAAGAAGATGATTTGGAAAGCCTGGAGAGAGATGTTAGTGAAGAGTCAGGGTGGAAACTTGTTCATGGAGATGTTTTCCGAACACCACGAAACTTGGTCTTGCTGTCAGCATTAGTGGGCACGGGTGCACAACTTGCTATGCTTGTGCTTCTGGTTATCTTGCTGGCAATTGTTGGCATGCTATATATTGGGCGTGGGGCAATTGTCACCACTTTCATTGTCTGCTATGCCCTTACCTCATTTATATCTGGCTATGTGAGTGGAGGACTGTATTCACGTAATGATGGCAAGCACTGGATAAAGTCAATGGTTCTTACGGCATCTCTCTTCCCATTTATGTGCTTTGGCATTGGATTTGTACTGAACATCATTGCCATATTCTATGGTTCTCTGGCTGCCATTCCTTTTGGCACTATGGTGGTTGTCTTTGTAATCTGGGCATTTATATCTTTCCCTCTAGCACTCCTTGGAACGGTTGTTGGAAGGAATTGGAGTGGGGCTCCAAATAATCCTTGTCGTGTGAAGACCATTCCTCGCCCAATTCCAGAAAAGAAGTGGTATCTGACACCAACAGTGGTGTCACTGATGGGTGGTCTGCTTCCCTTTGGGAGTATTTTCATTGAAATGTATTTTGTTTTCACCTCATTTTGGAACTACAAGGTATATTATGTTTACGGCTTCATGTTGCTGGTGTTTTTGATTCTTGTTATTGTGACCATCTGTGTTACAATCGTTGGAACATACTTCTTGCTTAATGCTGAAAATTATCACTGGCAATGGACATCATTCTTCTCAGCCGCATCAACGGCTGCTTATGTGTATCTTTATTCTATATACTATTACCACATGAAGACAAAGATGTCTGGATTTTTCCAGACCAGTTTCTATTTTGGCTACACTCTAATGTTCTGCCTTGGTTTAGGCATCCTTTGTGGGGCTGTTGGTTACCTGGGCTCTACATTGTTTGTAAGAAGAATTTATCGGAATATCAAGTGTGATTGA___GGAGAAGTAGATTGGAAACAAAATGAAATATATTTATGCCAGAGCTATTGCAGGGCTTGTTTAAGGCACCTGTTTCTTCCCAGGGAAAAAGGATTATAGTTCCATAGATTCACTCTTTATCCTTGAGCCATTTGTTCAATGCTATTCCTGGGCGTGGCATGCATTTTGTATTACTGAACATTGTAAGTTAGTTCAGTTGTAGCAAAATCACTTACTGTGACTGCAAGTCTTGCATCTCTATTCATTCAAAGCGGTACAAGTACAAGTTCACAAAAAACACTTATAGGAGGGCATTTTTGATTTGCAAGATGACTACTTCTGCCTGCAGATGTTGTTCATTGGGAGGATGGATTTTAGAACCGGGTCCTTATCTAGTAAAGAGTGGCAGAGTGTAGCTATTTTCAAGTTCCAACACCTTTTAAGAGTTCGGAATAGATTTTTATGCAGTTCACTTAGATAGAGTCATTCTGCTTCAGTACCTTTTTAGTGGGCTTTTGCAGATTCATTACTGTCATGCTTTTATGACTGAAATTAACAGTTGAAGATGGCTAGTGGTTTCAGGATATAACTTCAAAAATATTCATCCAATCTTTCAGAAACATTACTGCTTTCCTTAGTTCATGTTTACTTCATTCTAATTTCTTGTTTGGCTTTTTCCTTCTACACCTTGTGC

Fln Alignment:

Contig37873___VLYLVAALGTVFASEY-DHKYRANDPVTLWVNKVGPYNNPQETYNYYSLPFCQPAKNPTHKWXXXXXXXXXXXXIDSQVDIKFGKNVEKSPICTIELDATKVKQFKEAIENAYWFEFFMDDLPLWGFVGEIHLDKSDDQKHLLYTHKNIIVKINNDQIIHVNLTQENPKPLIAGKT----LELTYSVHWVETNITFARRFDVYLDYPFFEH--QIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAXXXXXXXXXXXXXXXXXGWKLVHGDVFRTPRNLVLLSALVGTGAQXXXXXXXXXXXXXXXXXY-IGRGAIVTTFIVCYALTSFISGYVSGGLYSRNDGKHWIKSMVLTASLFPFMCFGIGFVLNIIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPTVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMXXXXXXXXXXXXXXXXXGTYFLLNAENYHWQWXXXXXXXXXXXXXXXXXXXXXHMKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSTLFVRRIYRNIKCD
B8LKM1_______________LLLLALAWGAQVQGGYSDHKYSKGDHVPLYANKVGPFQNPSETYRYFDLPFCQP-EHMTEKREDLGEVLNGDRMVDAQYKLDFNVDKESEVLCKKKFKAEDVAKFREAVKNSYYFQMYYDDLPLWGFIGKVEKESKIDQKYSLFTHLHFDIKFNKDRVIEISVRTDPSFTVDITEDKEVEIEFVYSVKWAETDVPFKRRMDVYSKSSSLPQHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFIKYSHDEETADEQEET-----GWKYIHGDVFRYPPHKSLFSAVLGSGTQLLALAIFIFMLALVGVFYPYNRGALYTALVVIYALTSGIAGYTAASFYRQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGTILVILLIWTLVTSPLLVLGGIAGKNSRAEFQAPCRTTKYPREIPPLPWYRGTVPQMAMAGFLPFSAIYIELYYIFASLWGHKIYTIYSILFIVFIILIIVTAFITIALTYFQLAVEDHQWWWRSVLCGGSTGVFIFGYCVYYYFARSDMTGFMQTSFFFGYMTCICYGFFLMLGTVGFRASLLFVRHIYRSIKCE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
80	33	66			1.0
541	12		87		0.992554
544		87	12		0.992554
1812	80		20		0.995493
2256	96		3		0.993591
2345		6		93	0.999364
2498			6	93	0.999453
2501	93		6		0.999453
2505	92		7		0.999532
2506	92		7		0.999532
2539	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain