SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37867

Length: 2452 nt

UniGene Fasta

>sp_v3.0_unigene37867
GGGACTTGCCTTGGTAAGACCGAGGATTCCCCGGCAACAAACTCGGTTTGTTCAGAGATGGAGAGTGGTGATGAGCTTGGTTGTAGGATCAATGCCGGAGTTGGTAGCGGTGAGAGAGGTGAGTCTAGCAATGGTTGCTCATCTGGTGAAGGTAACAGCCCACCAAAGTTCTCGGATGGTTCTGGTCACAGAAAAATGGTTAACCTGACTACATTGGAGGACTCGGATCTTGGTAGACAGGGTAAAACTGGTGACGATTCAAAGCGTAATAAAGCTGAGCTAGGCAGAACATTTCAGACTGCTGTAAGTTCCCATGATTGGGCTCTTGCAGAGAGCCTTATTCCCTTGGCAGACACTCAGAGACTGAATGATGCCTTGTGTATTGCCCTTGATTCCATCTGGTTCCTAAGCACACAGCAGGAGCTTGCAGGGGTTACGAGGCTTATTGAGAAACTTATAAGAATGGGTGCTCGAGACTTCACTCGTGCAGCTCTGAGGACTTCGTTTCTTGCTTCATGTGTTTCAGCTTGCAGGAGTAGGACAATGAGCTTGGCAGACACTGTCACTCTCATGGCACAAAGCTCAAAATACATATGCATTACAATGGATTTGGCACCCTTAAATGGCCACCAAATCTGGAACAGAAGGCTGCGAGAACGTCTTCAGGAGTGCAACGGTGATGAGGTGTTGAAGGCCGAAGCTGCTGCAAAGGTACAAAGATTCACTGAATGGGCTCTCAAGTGCATTGGCTCTCATTCTCGTGGCCAAGGAAGTGGAGACAGAGTAATGCACAGTTCAGCCATTGAGATCCAATTGCAGTTATCGGCCTTCAAGACCTTTTTAGATCTGGCAGGGGATCGGTTGACAGGAAAAGACTTCACAGAAGCATTTGATGCTGCTTGCTTTCCCCTTACACTCTTTTCTAGTGCAATAGATCCAGGTTGGGCATCGGGAATTGCTGCAAGTGCAATGCAAGGCTTGTTAGGAATGCTTGTTGAAGGAGGGGCTGATAATGTCAACCAGTGCTTCCTTGAAGCTGCACGTTTTGGGAGCACTGAGCTTGTGCGGATTCTGTTACAGATTGCCCAGCGTAACAGCTTGGATGTGGATGTGGATCTTGCACTGGGATTTGCATCTCATTATAAAAAGATCGGGACTATGGAATGTCTTGTGGAGGAAGGGAATGCAGTTGCCTTTTTGGGGCCACTCATGAGAGCTGCAGAGAGGGGCTGCCTGCAAGTTGTGCAGTGGTTTGTTGAGAGAGGTTGCAGGGACATGGAACTCTGTCTTGCCCTCACAGCTGCGGCATCAAGTAGCAAAGTGGAAATAGCAAATTACCTATTGCCTCATGTACCTCAGCATGTCCTATCTACTTTGAGTGTTGAGATTATCAAAGCTGCTGGGGAGCGTAGTGGTGGTTCGTTGAAAGGTGTAGCTTTCCTCTTGCAAGCTGATTTCCTAAGTAATCCTGAAGCTACATACCAGACGGCAAACATTATTGCAAAATCAGAGGATGAAGCAGTAACATCTGAATTGCGTACCTTCTTACAAGAATATTGGTCAGAAGAAGCATTCTTAAGAGGTCGTCAGTTTGGACAAAATCACTACTTAAATGTAATGCGAGTGATCATGCGAGGTATGTCCCCTCTATTTCTGCAGGATCTCCCTAATCAATTGCAGGTAGCTATAGCGTACTTACCTTTGTATAAAGAATGCACTGATGCATCTGGGGTACTCCTATCCCAATGGTTAAGGGGTCAGCTAGTGGAGGCAGCATGGAGGCTTAGTTCGGGTATTTTTAGGTCACAGGAACAAGTTTTAAGTTGCAGCAAGGAAGATCTATTAGACATTCTAGAGTCTAACTTACCATCATTTTTGCTCAGCAATTTTTGTTAATAAGTTTAATTTTCACTGTTCTTTGTGAATATTGACTCAATGAAAAAGTATATCATTGAGGATATTCGGTCATGCATGGCAGAGCAGGTGCTAGTTCCTTTATTTTGAATTCTACTGCAAGCATGTCACTGGAATTCTTCTGGTAATGCTTATCTGTAGATTGCATTTCGCAAAATCAGCACATTTTCTGCTCCATGCATAATATACCTGTGCTTTCAGAACGACTGTTTTTTAATTGTAATCTTGAGTTATGTACGATACTCAAGTGCCTGAGAAACAAGGTTTTGGAAGAGAAAATGTTGATGGATCTTCCCAGAGTCCTGACTCTAGTGTACATCCTTTTCTAGGTCATAGACAAGATATCTTGTTTGAAGATTATGTATTAGTGGTGGGTTTATCTGGACTATGCCTAATTTTCCACGAACATGGGGCATGGATTAATCAGAAATTGTGGATTCTTCCCCTTGATAGTCAAGGCATGGCACAGAGAACTTTAACAATATGAAAAAGGTTTGCTATCAGAATGCAAATATATAAAAATGGATTTGATACAGTT

Ace file of the UniGene sp_v3.0_unigene37867

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ankyrin repeat-containing protein [Arabidopsis thaliana] ref\|NP_001031537.1\| ankyrin repeat-containing protein [Arabidopsis thaliana] gb\|AAC23416.1\| expressed protein [Arabidopsis thaliana] gb\|AAM98104.1\| At2g44090/F6E13.22 [Arabidopsis thaliana] dbj\|BAH2	-	-	0.0	67%
FL-Next	sp=F-box/ankyrin repeat protein SKIP35; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%

Source	Gene names
Sma3	AT2G44090; At2g44090; At3g59910; CLP; F24G16.180; GSVIVT00034776001; LOC_Os11g14180; OJ1712_E04.1; Os02g0562400; Os11g0246900; OsI_07683; OsI_35687; OsJ_07159; OsJ_33524; P0435E12.43; PHYPADRAFT_193246; PHYPADRAFT_233052; POPTRDRAFT_1081736; POPTRDRAFT_27

Source	InterPros	Term	Type	e value	Identity
Sma3	Ankyrin repeat	IPR002110	-	0.0	-
Sma3	TonB box, conserved site	IPR010916	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44090.1	Ankyrin repeat family protein chr2:18238682-18240828 REVERSE LENGTH=582	68%
RefSeq	Arabidopsis thaliana	NP_566008.1	ankyrin repeat-containing protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002309709.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9M1Y3

Fln msg: atg_distance in limit (1-15): atg_distance = 9,

Fln protein: MESGDELGCRINAGVGSGERGESSNGCSSGEGNSPPKFSDGSGHRKMVNLTTLEDSDLGRQGKTGDDSKRNKAELGRTFQTAVSSHDWALAESLIPLADTQRLNDALCIALDSIWFLSTQQELAGVTRLIEKLIRMGARDFTRAALRTSFLASCVSACRSRTMSLADTVTLMAQSSKYICITMDLAPLNGHQIWNRRLRERLQECNGDEVLKAEAAAKVQRFTEWALKCIGSHSRGQGSGDRVMHSSAIEIQLQLSAFKTFLDLAGDRLTGKDFTEAFDAACFPLTLFSSAIDPGWASGIAASAMQGLLGMLVEGGADNVNQCFLEAARFGSTELVRILLQIAQRNSLDVDVDLALGFASHYKKIGTMECLVEEGNAVAFLGPLMRAAERGCLQVVQWFVERGCRDMELCLALTAAASSSKVEIANYLLPHVPQHVLSTLSVEIIKAAGERSGGSLKGVAFLLQADFLSNPEATYQTANIIAKSEDEAVTSELRTFLQEYWSEEAFLRGRQFGQNHYLNVMRVIMRGMSPLFLQDLPNQLQVAIAYLPLYKECTDASGVLLSQWLRGQLVEAAWRLSSGIFRSQEQVLSCSKEDLLDILESNLPSFLLSNFC*

Protein Length: 614

Fln nts: GGGACTTGCCTTGGTAAGACCGAGGATTCCCCGGCAACAAACTCGGTTTGTTCAGAG_-_ATGGAGAGTGGTGATGAGCTTGGTTGTAGGATCAATGCCGGAGTTGGTAGCGGTGAGAGAGGTGAGTCTAGCAATGGTTGCTCATCTGGTGAAGGTAACAGCCCACCAAAGTTCTCGGATGGTTCTGGTCACAGAAAAATGGTTAACCTGACTACATTGGAGGACTCGGATCTTGGTAGACAGGGTAAAACTGGTGACGATTCAAAGCGTAATAAAGCTGAGCTAGGCAGAACATTTCAGACTGCTGTAAGTTCCCATGATTGGGCTCTTGCAGAGAGCCTTATTCCCTTGGCAGACACTCAGAGACTGAATGATGCCTTGTGTATTGCCCTTGATTCCATCTGGTTCCTAAGCACACAGCAGGAGCTTGCAGGGGTTACGAGGCTTATTGAGAAACTTATAAGAATGGGTGCTCGAGACTTCACTCGTGCAGCTCTGAGGACTTCGTTTCTTGCTTCATGTGTTTCAGCTTGCAGGAGTAGGACAATGAGCTTGGCAGACACTGTCACTCTCATGGCACAAAGCTCAAAATACATATGCATTACAATGGATTTGGCACCCTTAAATGGCCACCAAATCTGGAACAGAAGGCTGCGAGAACGTCTTCAGGAGTGCAACGGTGATGAGGTGTTGAAGGCCGAAGCTGCTGCAAAGGTACAAAGATTCACTGAATGGGCTCTCAAGTGCATTGGCTCTCATTCTCGTGGCCAAGGAAGTGGAGACAGAGTAATGCACAGTTCAGCCATTGAGATCCAATTGCAGTTATCGGCCTTCAAGACCTTTTTAGATCTGGCAGGGGATCGGTTGACAGGAAAAGACTTCACAGAAGCATTTGATGCTGCTTGCTTTCCCCTTACACTCTTTTCTAGTGCAATAGATCCAGGTTGGGCATCGGGAATTGCTGCAAGTGCAATGCAAGGCTTGTTAGGAATGCTTGTTGAAGGAGGGGCTGATAATGTCAACCAGTGCTTCCTTGAAGCTGCACGTTTTGGGAGCACTGAGCTTGTGCGGATTCTGTTACAGATTGCCCAGCGTAACAGCTTGGATGTGGATGTGGATCTTGCACTGGGATTTGCATCTCATTATAAAAAGATCGGGACTATGGAATGTCTTGTGGAGGAAGGGAATGCAGTTGCCTTTTTGGGGCCACTCATGAGAGCTGCAGAGAGGGGCTGCCTGCAAGTTGTGCAGTGGTTTGTTGAGAGAGGTTGCAGGGACATGGAACTCTGTCTTGCCCTCACAGCTGCGGCATCAAGTAGCAAAGTGGAAATAGCAAATTACCTATTGCCTCATGTACCTCAGCATGTCCTATCTACTTTGAGTGTTGAGATTATCAAAGCTGCTGGGGAGCGTAGTGGTGGTTCGTTGAAAGGTGTAGCTTTCCTCTTGCAAGCTGATTTCCTAAGTAATCCTGAAGCTACATACCAGACGGCAAACATTATTGCAAAATCAGAGGATGAAGCAGTAACATCTGAATTGCGTACCTTCTTACAAGAATATTGGTCAGAAGAAGCATTCTTAAGAGGTCGTCAGTTTGGACAAAATCACTACTTAAATGTAATGCGAGTGATCATGCGAGGTATGTCCCCTCTATTTCTGCAGGATCTCCCTAATCAATTGCAGGTAGCTATAGCGTACTTACCTTTGTATAAAGAATGCACTGATGCATCTGGGGTACTCCTATCCCAATGGTTAAGGGGTCAGCTAGTGGAGGCAGCATGGAGGCTTAGTTCGGGTATTTTTAGGTCACAGGAACAAGTTTTAAGTTGCAGCAAGGAAGATCTATTAGACATTCTAGAGTCTAACTTACCATCATTTTTGCTCAGCAATTTTTGTTAA___TAAGTTTAATTTTCACTGTTCTTTGTGAATATTGACTCAATGAAAAAGTATATCATTGAGGATATTCGGTCATGCATGGCAGAGCAGGTGCTAGTTCCTTTATTTTGAATTCTACTGCAAGCATGTCACTGGAATTCTTCTGGTAATGCTTATCTGTAGATTGCATTTCGCAAAATCAGCACATTTTCTGCTCCATGCATAATATACCTGTGCTTTCAGAACGACTGTTTTTTAATTGTAATCTTGAGTTATGTACGATACTCAAGTGCCTGAGAAACAAGGTTTTGGAAGAGAAAATGTTGATGGATCTTCCCAGAGTCCTGACTCTAGTGTACATCCTTTTCTAGGTCATAGACAAGATATCTTGTTTGAAGATTATGTATTAGTGGTGGGTTTATCTGGACTATGCCTAATTTTCCACGAACATGGGGCATGGATTAATCAGAAATTGTGGATTCTTCCCCTTGATAGTCAAGGCATGGCACAGAGAACTTTAACAATATGAAAAAGGTTTGCTATCAGAATGCAAATATATAAAAATGGATTTGATACAGTT

Fln Alignment:

Contig37867___SKRNKAELGRTFQTAVSSHDWALAESLIPLADTQRLNDALCIALDSIWFLSTQQELAGVTRLIEKLIRMGARDFTRAALRTSFLASCVSACRSRTMSLADTVTLMAQSSKYICITMDLAPLNGHQIWNRRLRERLQECNGDEVLKAEAAAKVQRFTEWALKCIGSHSRGQGSGDRVMHSSAIEIQLQLSAFKTFLDLAGDRLTGKDFTEAFDAACFPLTLFSSAIDPGWASGIAASAMQGLLGMLVEGGADNVNQCFLEAARFGSTELVRILLQIAQRNSLDVDVDLALGFASHYKKIGTMECLVEEGNAVAFLGPLMRAAERGCLQVVQWFVERGCRDMELCLALTXXXXXXKVEIANYLLPHVPQHVLSTLSVEIIKAAGERSGGSLKGVAFLLQADFLSNPEATYQTANIIAK-SEDEAVTSELRTFLQEYWSEEAFLRGRQFGQNHYLNVMRVIMRGMSPLFLQDLPNQLQVAIAYLPLYKECTDASGVLLSQWLRGQLVEAAWRL
Q9M1Y3_______________NRQERIELGRLFQGAVTSLDWELAERLIQLADPQTLNDLLCVGLDSVWFLSTKPEFQGITGLIKKIICHGAHDFTRATLRTSFLASCVSACQSRTMSLSDTVTVMAQ----------------------RLHERLQECNGDEILKAEAGAKVQKFTEWALKCIGFHSRCQGAKDRVSQNSAAEIELQLSAFKMFLDLAGNHLSGRDFTEAFDAACFPLTLFSNSFDPGWASGMSATVIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRVLLQIAQRNSLDVDVDLALGFASHYCKIGTMKCLVEEGNAIAFLGPLMRAAERGCMQVVQWFVKRGCRDMELCLALTAATSSCQVEVAAYLLPRVPPPVLTALSIEILKAAGERSGGSLQGVEFLLKSDFLGDSTATYSVADSIARSSEDESVPSDLKSFLQEHWSESAFEKGMRESHDDFMNFMRVLKKGESAISLRDLPAPLRVAIAYMPLYRECMKADGRLLSQRLRGQLVEAVRQL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
150	66		33		0.997452
248	25	75			0.996473
256		25		75	0.996473
365	25	75			0.996473
369	75			25	0.996473
637	25	75			0.996473
642	75		25		0.996473
764			66	33	0.997452
889	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain