SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37854

Length: 2032 nt

UniGene Fasta

>sp_v3.0_unigene37854
TTGTATCATCATTTTGCTGCAGAAGGTGGAAACTTTCAGTCGAAGATGGCACTGGCCTATACCTATTATCGACAACAGATGTATGAGAAATCTGTTAAGCTTTATGCAGAACTTGCATCTGTAGCAGTGGCTAGCTTTCTTAGTTTCAATGATTCACCATTGGTTGAACCAGTAAGGATCAATGATGGAGCTGAAGAGAACAAAGCAGCATTAAGGAAGTCGCGTGGTGAGGAAGATGATGATTTCCAAATTATTGAATATCAGGCCCAGAAAGGGAATGCACTGGCAATGTATAAACTTGGTATATTCTACTACTTTGGTTTGAGGGGGGTTCGCCGTGACAATGCGAAAGCATTATCATGGTTTCTTAAAGCGGTTGAGAAGGGAGACTCAAATTCGATGGAATTTCTCGGTGAAATTTATGCAAGAGGTTCCGGAGTTGAGAGGAATTTTACCAAGGCACTAGAGTGGTTCAAGGCTGCCTCTAGGCGAAAGCGGTTTTCTGCATATAATGGCATTGGCTATTTGTATATGAAGGGTCATGGAGTAGAAAAGAAAAATTATACAAAGGCAAGAGAATTCTTCAAAAAGGCAGCGGAAAATGACGACCCCAATGGTCATGGCCATTACAATCTGGGAGTGTTGTACTTTAAAGGACTGGGTGTGAAGAAAGACATTAAAGTAGCTTCCAGGTATTTTATAACAGCAGCTAATGCTGGTCAACCAAAGGCCTTCTATCAATTAGCAAAAATGTTCCAGAAAGGCATTGGTCTGAAAAAGGATCTTAAGATGGCCACTACATTCTATAAGCTTGTTGCAGAGAGAGGACCTTGGGGATCCTTGTTGCGATGGGCATTAGAGTGTTACTTGAAAGGGCAAACAGGCAGAGCTCTGCTATTATACTCGAGAGTTGCTGAACTTGGATATGAGGTTGCACAGAGTAATGCTGCATGGATTCTTGATAAGTTTGGGGACTATGATATATGCATAGGAAAGTCAGGTTTCTGCAATGATGTTGAACGACATCAACGTGCACACACCCTTTGGTGGCATGCATCAGAGCAGGGTAATGAGCATGCGGCACTTTTAATTGGGGATGCCTATTATTATGGCAGGGGCACTGAAAGAGATTTTGAGCGTGCTGCAGAGGCTTACATGCATGCTCATTACCAGGTGAATGCCCAGGCTATGTTCAACCTTGGATACATGCATGAACATGGAGAGGGCCTTCCTTTTGATTTGCACTTGGCAAAACGATATTATGATCAAGCACTAGAGACTGATCCAGCTGCTAAGTTGCCTGTGATGCTTGCACTTCTGAGTGTATGGATTAGAAAGAACTATGGTGGCAGCTGTTTGGTGACACTAATTGATTCTCTCCCTCACATGCTTCCCAACTTAGGAAGCTGGTTAAAGAAGACCCTTATTGATGATGGCAATTTGACTTTAGTTACACTGTTTGCCTGCCTTTTGACAGTCTTGTATCTTCGTGATAGGCAAAGGCGATTAGCTGCTCAAGTAGTTCCTCAACCCCAAGTAAATAATAATTGATAATCGTGACTTTCTCAGGTCAGTGTGGTCTAATTTTATAGAACATTTCATACTAGGAATCATTGGTGGGCATATTGTGTTTTCTTGTACATGGGGCCTTCGGCATGAAAATGGCTTCACTGTAATAGATGAGTATTGTTGAAGAGTCATTGGGCTCATCTGACTATGTGACAGTTTGAGATCATATAGGGCCATACGAAGTGACTCTGAACAAATATCTTGATTCTTAGATGGGAGATGTTTTGCCTTTTTCTTCGGATAAAATGCTTCCTTGCCATTCTTTTAGATATGACATCTGTGAGTCGCCTTCAGACTTGGATAAACTTGGATAAAATTGAAGAGTTGAATCGGGGTTCCTCTACAAATGTAGGCAAAATATCTTCGTTAAGAGTAGTACAAGTTGAGTGTAGGGGGGTTATTGGGGTTATTTCCATGTCCTTGAATCATTTGGCTAATAATTCTATTTTTCAACCATCATTGG

Ace file of the UniGene sp_v3.0_unigene37854

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0790 FOG: TPR repeat, SEL1 subfamily	-	-	2.0e-25	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%

Source	Gene names
Sma3	At HRD3; At1g18260; At1g73570; F6D5.4; GSVIVT00017845001; Gm sel-1; ISP11; LOC_Os03g15350; Os03g0259300; OsI_10819; OsJ_10203; PHYPADRAFT_11530; PHYPADRAFT_117372; PHYPADRAFT_204384; POPTRDRAFT_569730; POPTRDRAFT_575012; RCOM_0566120; T9L24.27;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18260.1	HCP-like superfamily protein chr1:6279047-6282008 REVERSE LENGTH=678	71%
RefSeq	Arabidopsis thaliana	NP_564049.1	Hr.3 like protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002322109.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR29

Fln msg: your sequence is longer than subject: 517 - 266

Fln protein: LYHHFAAEGGNFQSKMALAYTYYRQQMYEKSVKLYAELASVAVASFLSFNDSPLVEPVRINDGAEENKAALRKSRGEEDDDFQIIEYQAQKGNALAMYKLGIFYYFGLRGVRRDNAKALSWFLKAVEKGDSNSMEFLGEIYARGSGVERNFTKALEWFKAASRRKRFSAYNGIGYLYMKGHGVEKKNYTKAREFFKKAAENDDPNGHGHYNLGVLYFKGLGVKKDIKVASRYFITAANAGQPKAFYQLAKMFQKGIGLKKDLKMATTFYKLVAERGPWGSLLRWALECYLKGQTGRALLLYSRVAELGYEVAQSNAAWILDKFGDYDICIGKSGFCNDVERHQRAHTLWWHASEQGNEHAALLIGDAYYYGRGTERDFERAAEAYMHAHYQVNAQAMFNLGYMHEHGEGLPFDLHLAKRYYDQALETDPAAKLPVMLALLSVWIRKNYGGSCLVTLIDSLPHMLPNLGSWLKKTLIDDGNLTLVTLFACLLTVLYLRDRQRRLAAQVVPQPQVNNN*

Protein Length: 518

Fln nts: TTGTATCATCATTTTGCTGCAGAAGGTGGAAACTTTCAGTCGAAGATGGCACTGGCCTATACCTATTATCGACAACAGATGTATGAGAAATCTGTTAAGCTTTATGCAGAACTTGCATCTGTAGCAGTGGCTAGCTTTCTTAGTTTCAATGATTCACCATTGGTTGAACCAGTAAGGATCAATGATGGAGCTGAAGAGAACAAAGCAGCATTAAGGAAGTCGCGTGGTGAGGAAGATGATGATTTCCAAATTATTGAATATCAGGCCCAGAAAGGGAATGCACTGGCAATGTATAAACTTGGTATATTCTACTACTTTGGTTTGAGGGGGGTTCGCCGTGACAATGCGAAAGCATTATCATGGTTTCTTAAAGCGGTTGAGAAGGGAGACTCAAATTCGATGGAATTTCTCGGTGAAATTTATGCAAGAGGTTCCGGAGTTGAGAGGAATTTTACCAAGGCACTAGAGTGGTTCAAGGCTGCCTCTAGGCGAAAGCGGTTTTCTGCATATAATGGCATTGGCTATTTGTATATGAAGGGTCATGGAGTAGAAAAGAAAAATTATACAAAGGCAAGAGAATTCTTCAAAAAGGCAGCGGAAAATGACGACCCCAATGGTCATGGCCATTACAATCTGGGAGTGTTGTACTTTAAAGGACTGGGTGTGAAGAAAGACATTAAAGTAGCTTCCAGGTATTTTATAACAGCAGCTAATGCTGGTCAACCAAAGGCCTTCTATCAATTAGCAAAAATGTTCCAGAAAGGCATTGGTCTGAAAAAGGATCTTAAGATGGCCACTACATTCTATAAGCTTGTTGCAGAGAGAGGACCTTGGGGATCCTTGTTGCGATGGGCATTAGAGTGTTACTTGAAAGGGCAAACAGGCAGAGCTCTGCTATTATACTCGAGAGTTGCTGAACTTGGATATGAGGTTGCACAGAGTAATGCTGCATGGATTCTTGATAAGTTTGGGGACTATGATATATGCATAGGAAAGTCAGGTTTCTGCAATGATGTTGAACGACATCAACGTGCACACACCCTTTGGTGGCATGCATCAGAGCAGGGTAATGAGCATGCGGCACTTTTAATTGGGGATGCCTATTATTATGGCAGGGGCACTGAAAGAGATTTTGAGCGTGCTGCAGAGGCTTACATGCATGCTCATTACCAGGTGAATGCCCAGGCTATGTTCAACCTTGGATACATGCATGAACATGGAGAGGGCCTTCCTTTTGATTTGCACTTGGCAAAACGATATTATGATCAAGCACTAGAGACTGATCCAGCTGCTAAGTTGCCTGTGATGCTTGCACTTCTGAGTGTATGGATTAGAAAGAACTATGGTGGCAGCTGTTTGGTGACACTAATTGATTCTCTCCCTCACATGCTTCCCAACTTAGGAAGCTGGTTAAAGAAGACCCTTATTGATGATGGCAATTTGACTTTAGTTACACTGTTTGCCTGCCTTTTGACAGTCTTGTATCTTCGTGATAGGCAAAGGCGATTAGCTGCTCAAGTAGTTCCTCAACCCCAAGTAAATAATAATTGA___TAATCGTGACTTTCTCAGGTCAGTGTGGTCTAATTTTATAGAACATTTCATACTAGGAATCATTGGTGGGCATATTGTGTTTTCTTGTACATGGGGCCTTCGGCATGAAAATGGCTTCACTGTAATAGATGAGTATTGTTGAAGAGTCATTGGGCTCATCTGACTATGTGACAGTTTGAGATCATATAGGGCCATACGAAGTGACTCTGAACAAATATCTTGATTCTTAGATGGGAGATGTTTTGCCTTTTTCTTCGGATAAAATGCTTCCTTGCCATTCTTTTAGATATGACATCTGTGAGTCGCCTTCAGACTTGGATAAACTTGGATAAAATTGAAGAGTTGAATCGGGGTTCCTCTACAAATGTAGGCAAAATATCTTCGTTAAGAGTAGTACAAGTTGAGTGTAGGGGGGTTATTGGGGTTATTTCCATGTCCTTGAATCATTTGGCTAATAATTCTATTTTTCAACCATCATTGG

Fln Alignment:

Contig37854___LYHHFAAEGGNFQSKMALAYTYYRQQMYEKSVKLYAELASVAVASFLSFNDSPLVEPVRINDGAEENKAALRKSRGEEDDDFQIIEYQAQKGNALAMYKLGIFY
B8LR29_______________LYHHFAAEGGNFQSKMALAYTYYRQQMYEKSVKLYAELASVAVASFLSFNESPLVEPVRINDGAEENKEALRKSRGEEDDDFQIIEYQAQKGSAVAMYRLGIFY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1653			75	25	0.996473
1662	75			25	0.996473
1809		12	87		0.992554
1835	16	16		66	0.988813
1836	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain