SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37837

Length: 1255 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37837 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein L7Ae-like [Brassica rapa]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	0.0	-
Sma3	ribosome biogenesis	GO:0042254	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	IPR002415	-	-
Sma3	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3	Ribosomal protein L7Ae conserved site	IPR004037	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G22380.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein chr4:11812041-11812922 REVERSE LENGTH=128	92%
RefSeq	Arabidopsis thaliana	NP_193969.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002327218.1	predicted protein [Populus trichocarpa]	94%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
392	40		60		1.0
619		14		85	0.993533
620		14		85	0.993533
623	85			14	0.993533
1117		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain