SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37832

Length: 1633 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37832

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cop9 complex subunit 7a, putative n=1 Tax=Ricinus communis RepID=B9T5M0_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02200.2	Proteasome component (PCI) domain protein chr3:406692-408919 FORWARD LENGTH=417	57%
RefSeq	Arabidopsis thaliana	NP_850826.1	Proteasome component (PCI) domain protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002323907.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRZ9

Fln msg: Overlapping hits, possible frame ERROR between 1314 and 1310,

Fln protein: MAALVETTDEDATLAVARFTAEMAWANAGPEVAEPEVIHCIEEAQSYMLERRWSELVSLLLTSADLIFANSAEKDLECIFTVICNLVTKAGSPDEALAMADQIVTKVIQQPSDKPALRLRILFNLYNMLENPYSKFLVYERALKLAANGKVADLIIPSFKKMDAFLKEWNIRKNNQRELFLAISNILKDNKGSAKDSYSFLLKYLATFDGEDAYTISEAKEEAVRAIIEFVKDMPAVAQLEKDGKYALVYRLLQIFLTQRLDSYLEFQAANSALLKSYGLVHEDCIMKMRLMSLADLASKGSGEISYVSVRDTLRVTDDDVEFWIVRAISAKLVDCKMDQMRQVAVVNRSTERVFGPPQWxxxLHSRLSVWKENIANIIRNIQKANAAVDQAPEALQGLVVQ*

Protein Length: 404

Fln nts: ATGTCATGGAATCCGACAAAACTGAAAGAAAAAACACAAAATACTCGCCTCTCTAAAACTTTCTACGAAATTAATATAAAGGCACTGTGGCATTTATGCCCTTTGTTTGAGCAGCTGTCGAAATAGAGGAGCGCAAACGGGGGCTAGAGTTTCTGGAGGAAGGGCCTGAATATATATAAATATAAGAAGTTTTCAACGCCATTTACATCATTCAACCACACTATAAGG_-_ATGGCAGCACTTGTTGAGACTACGGACGAGGATGCTACTCTTGCTGTGGCTCGGTTCACTGCAGAAATGGCATGGGCCAATGCAGGGCCTGAAGTTGCAGAGCCTGAAGTGATACATTGCATTGAGGAAGCCCAATCCTATATGCTGGAAAGAAGATGGTCGGAGTTGGTATCTCTTTTACTCACTTCAGCTGACCTTATTTTTGCAAACTCAGCAGAGAAAGATCTCGAGTGTATTTTCACAGTCATCTGTAACCTTGTGACAAAAGCGGGAAGTCCAGATGAAGCTCTGGCCATGGCAGATCAGATAGTCACAAAAGTTATTCAACAACCTAGTGATAAACCTGCTTTGCGCTTGAGAATACTCTTCAATCTGTACAACATGCTTGAGAATCCATATAGCAAATTCTTGGTTTACGAGAGAGCTCTTAAGTTGGCAGCTAATGGGAAAGTTGCAGATCTTATCATTCCTTCTTTCAAAAAGATGGATGCATTCCTGAAAGAATGGAACATCCGTAAAAATAACCAGCGAGAACTTTTTCTGGCTATTTCCAACATCTTGAAAGACAATAAAGGTTCAGCAAAGGATTCTTACTCTTTTCTTCTGAAGTACTTAGCAACCTTTGATGGGGAGGATGCTTATACGATCAGTGAAGCAAAAGAAGAAGCTGTGAGGGCCATAATAGAATTTGTCAAAGATATGCCTGCTGTGGCACAACTGGAGAAAGATGGAAAGTATGCATTGGTATACCGCTTGTTACAGATTTTCCTCACTCAGCGACTAGATTCTTATTTGGAATTTCAAGCTGCAAATTCTGCATTACTGAAAAGCTATGGTCTAGTCCATGAAGATTGCATAATGAAAATGCGGTTAATGTCTCTTGCTGACCTTGCTTCAAAAGGATCTGGAGAAATTTCGTATGTGTCTGTGAGGGATACATTGCGGGTTACAGATGATGATGTGGAATTTTGGATAGTTCGGGCAATCAGTGCAAAACTTGTCGATTGTAAGATGGATCAGATGCGTCAAGTAGCAGTTGTAAACCGGTCTACTGAACGAGTATTTGGACCACCTCAATGGxxxxxxxxxCTACACTCAAGACTGTCTGTTTGGAAGGAAAATATTGCAAATATTATAAGAAATATCCAGAAGGCAAATGCTGCTGTTGACCAGGCACCTGAGGCATTACAAGGGTTGGTAGTCCAATAA___GCATTTATTTTGTATTTTGCTGGAATTTTGGCTGAACGAAACTTCTTCTGGGGTTTTCTAGGGTCCAGTGAAAGATGAGTTAACACTCATGACCAGGAAGGCTGTGCAGAAATTGAGATTTCTTACGTCAAAACAATTATTTTACATGTTCATAGCTGAGGTTAATGCTGATATGGTTTTATTTTCTCCATGGCATTT

Fln Alignment:

Contig37832___MAALVETTDEDATLAVARFTAEMAWANAGPEVAEPEVIHCIEEAQSYMLERRWSELVSLLLTSADLIFANSAEKDLECIFTVICNLVTKAGSPDEALAMADQIVTKVIQQPSDKPALRLRILFNLYNMLENPYSKFLVYERALKLAANGKVADLIIPSFKKMDAFLKEWNIRKNNQRELFLAISNILKDNKGSAKDSYSFLLKYLATFDGEDAYTISEAKEEAVRAIIEFVK----------DMPAVAQLEKDGKYALVYRLLQIFLTQRLDSYLEFQAANSALLKSYGLVHEDCIMKMRLMSLADLASKGSGEISYXXXXXXXXXXXXXXEFWIVRAISAKLVDCKMDQMRQVAVVNRSTERVFGPPQWxxLHSRLSVWKENIANIIRNIQKANAAVDQAPEALQGLVVQ
B8LRZ9_______________MAALVETSDEDATLAVARFTAEMAWANAGPEVAEPQVIHYIEEAQSYMLERRWSDLVSLLLTSADLIFANSAEKDLECIFTVICNLVTKAGSPDEALAMAEQIVTKVTQQPSDKPALRLRILFNLYNMLENPYSKFLVYERALKLAANGKVADLIIPSFKKMDAFLKEWNIRKNNQRDLFLAISNILKDNKGSAKDSYSFLLKYLATFDGEDAYTTSEAKEEAVRAIIEFVKAPDMFQCDLLDMPAVAQLGKDGKYALVYRLLQIFLTQRLDSYLEFQAANSALLKSYGLVHEDCITKMRLMSLADLASKGSGEVSYVSVRDTLRVTDDDVEFWIVRAISAKLVDCKMDQMRQVAVVNRSTERVFGPSQWxxLHSRLSVWKENIANIIRNIQKANAAADQAPEALQGMAVQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain