SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37828

Length: 1930 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37828 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	root-specific metal transporter [Solanum lycopersicum]	-	-	0.0	58%
FL-Next	sp=Metal transporter Nramp1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Sma3	Nramp transporter	-	-	1.076e-22	-

Source	Gene names
Sma3	At1g15960; At1g47240; At1g80830; At5g67330; B1153E06.4; CHLREDRAFT_113049; CHLREDRAFT_128400; CsNramp1; DMT1; F23A5.18; F8G22.4; GSVIVT00011628001; GSVIVT00014922001; GSVIVT00015427001; GSVIVT00015428001; GSVIVT00015429001; GSVIVT00015430001; GSVIVT000196

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	iron ion transport	GO:0006826	Biological Process	-
Sma3	cellular iron ion homeostasis	GO:0006879	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to iron ion	GO:0010039	Biological Process	-
Sma3	positive regulation of oxygen and reactive oxygen species metabolic process	GO:0010670	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR018111	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G80830.1	NRAMP1, PMIT1, ATNRAMP1 natural resistance-associated macrophage protein 1 chr1:30373066-30375644 REVERSE LENGTH=532	65%
RefSeq	Arabidopsis thaliana	NP_178198.1	metal transporter Nramp1 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002332060.1	nramp transporter [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SAH8

Fln msg:

Fln protein: MAEVSVLRSGEFRASSLIEIPKSSSLVCSNELDLSGHVKMRELKEKQGWRKFIAHIGPGFLVSIAYLDPGNLESDLQAGAQYKYELLWVILVASIFSLLIQSLAANLGVTTGKHLAEHYREEYPRNINYILWLLAEIAVIAADIPEVLGTAFALNMLFHIPLWVGVLITGLSTLLLLGMQRFGIRKLEGFVALLVFTMFGCFFGEMAYAKPKADEVVKGLFVPLLKGNGATGLGISLLGAMVMPHNLFLHSALVLSRKVSPSTSGINLACRYFLIETGVALFVAFMINVAVISVAGSICFSPNIPPEQLQNCGNLDLNASAFLLKQVLGKWSSTVFAVALLASGQSSTITGTYAGQYVMQGFLNMKMKPWLRNLITRCIAILPSLIVSLISGSSGAGKLIIISSMILSFELPFALIPLLKFTSSQTKMGPHKNSITTLVAAWAIGCCIIGINIYYLSTEFVKWLIHSSLPKVALVFIGLVVFPLMALYLAGILYLALRREKVDTYIASGESSTQSRSNPERELY*

Protein Length: 526

Fln nts: TATTACTGAGTAACA_-_ATGGCTGAGGTATCAGTCCTGAGATCAGGAGAGTTTAGGGCGAGCAGCCTAATAGAAATACCAAAGAGCTCCTCGTTGGTCTGTTCGAATGAATTGGATTTATCTGGGCATGTCAAGATGCGAGAATTGAAGGAGAAACAAGGGTGGAGAAAATTTATTGCTCATATTGGACCTGGATTTCTCGTGAGCATAGCCTACCTTGATCCTGGAAATCTGGAGTCTGATTTGCAGGCGGGCGCACAGTACAAATATGAGCTACTCTGGGTCATCCTTGTGGCGTCAATCTTTTCCTTGCTTATTCAATCCCTTGCAGCAAATTTAGGAGTCACAACAGGTAAGCATCTTGCTGAACATTACAGGGAAGAGTACCCAAGGAACATCAATTATATCTTATGGCTGCTTGCAGAAATTGCTGTTATTGCAGCAGATATTCCTGAAGTGCTGGGAACTGCGTTTGCTCTTAATATGCTGTTCCATATACCTTTATGGGTTGGTGTTCTAATAACTGGACTCAGCACACTCTTGCTCCTAGGCATGCAGAGATTTGGGATCAGAAAATTGGAGGGGTTCGTTGCTCTTCTTGTGTTTACAATGTTTGGGTGTTTCTTTGGAGAGATGGCATATGCAAAGCCTAAAGCGGACGAGGTTGTGAAAGGGCTGTTCGTGCCTCTGTTAAAGGGAAATGGAGCAACCGGTCTTGGCATCTCTCTTCTCGGAGCTATGGTTATGCCGCACAATCTATTTCTTCATTCTGCCTTGGTTCTGTCTCGTAAAGTATCTCCTTCTACTTCTGGAATTAATTTAGCATGCAGATATTTCCTCATAGAAACCGGAGTTGCTCTGTTTGTAGCATTTATGATCAACGTTGCTGTTATTTCTGTGGCCGGGTCCATCTGTTTTTCGCCAAACATACCTCCAGAGCAGTTGCAGAATTGTGGGAACTTGGACCTCAATGCATCAGCATTTCTACTAAAACAAGTTCTAGGGAAATGGAGCTCAACAGTTTTTGCGGTAGCACTCCTAGCATCTGGACAAAGCTCAACGATCACAGGAACATATGCTGGGCAGTATGTCATGCAGGGATTCCTTAATATGAAAATGAAGCCATGGCTCCGTAATCTTATCACAAGGTGCATTGCCATCCTGCCAAGTTTAATAGTATCGCTCATCAGTGGCTCTTCTGGTGCAGGGAAACTTATTATTATTTCCTCGATGATATTATCATTTGAATTGCCATTTGCTTTAATTCCCTTGCTGAAGTTTACAAGCAGTCAGACAAAGATGGGACCTCACAAGAACTCAATTACTACTCTGGTTGCTGCGTGGGCGATTGGATGCTGTATCATAGGCATCAACATCTACTACCTCAGTACAGAATTTGTTAAATGGTTAATCCATAGCAGTCTCCCTAAGGTTGCTTTAGTATTTATAGGACTAGTGGTTTTTCCACTTATGGCTCTATATCTGGCCGGAATTTTGTATTTGGCTCTTCGGCGAGAGAAGGTGGACACTTATATAGCTTCAGGAGAATCCTCCACGCAAAGTCGTTCAAACCCTGAACGAGAACTATATTAG___TGACCAATGTCCAATAATTTCAGTTAAGTGAATATGTTTTAATAACCGTTGTTTGGTATGCTGGGGGAATTTGAATTGAATATATGTGGAATGTGTGCAGAGAAAGCACGTTCTATTTAAAAGGTATAGGCAGCTGTAGTTTCATCTAATTCCTACTGGTCAGAGTGGAATATATTTTTAAAATGAATTTTGTGTATGCTTGCTGCAAACTGTGAATATTTTCCATCCTACCATGGCTGTGTGACTAGGAGATTGGCTCTGATCTCTTTATCGAGGATGGTTACTTCAATTATAGTGAGTTGCAATTATAGCGATAACTGTAATGCATTTTATTGATAAA

Fln Alignment:

Contig37828___LKEKQGWRKFIAHIGPGFLVSIAYLDPGNLESDLQAGAQYKYELLWVILVASIFSLLIQSLAANLGVTTGKHLAEHYREEYPRNINYILWLLAEIAVIAADIPEVLGTAFALNMLFHIPLWXXXXXXXXXXXXXXGMQRFGIRKLEGFVALLVFTMFGCFFGEMAYAKPKADEVVKGLFVPLLKGNGATGLGISLLGAMVMPHNLFLHSALVLSRKVSPSTSGINLACRYFLIETGVALFVAFMINVAVISVAGSICFSPNIPPEQLQNCGNLDLNASAFLLKQVLGKWSSTVFAVALLASGQSSTITGTYAGQYVMQGFLNMKMKPWLRNLITRCXXXXXXXXXXXXXXXXXXGKLIIISSMILSFELPFALIPLLKFTSSQTKMGPHKNSITTLVAAWAXXXXXXXXXXXYLSTEFVKWLIHSSLPKVALVFIGLVVFPXXXXXXXXXXXXXLRREKVDTYIASGESSTQSRSNPEREL
Q9SAH8_______________VSEKKSWKNFFAYLGPGFLVSIAYIDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQKYGVRKLEFLIAFLVFTIAICFFVELHYSKPDPGEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSASGIKEACRFYLIESGLALMVAFLINVSVISVSGAVCNAPNLSPEDRANCEDLDLNKASFLLRNVVGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWLRNLLTRCLAIIPSLIVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSCKTKMGSHVNPMAITALTWVIGGLIMGINIYYLVSSFIKLLIHSHMKLILVVFCGILGFAGIALYLAAIAYLVFRKNRVATSLLISRDSQNVETLPRQDI

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
724		16		83	0.994512
1098	80			20	1.0
1124	78			21	1.0
1138	78			21	1.0
1139		21		78	1.0
1151		78	21		1.0
1192		75		25	1.0
1215		75	25		1.0
1238		83	16		0.994512
1259		83		16	0.994512
1300			20	80	0.995493
1343		66		33	0.997452
1347			66	33	0.997452
1349	66			33	0.997452
1482	83		16		0.994512
1514	16	83			0.994512
1558		75		25	0.996473
1660	14			85	0.993533
1678		14		85	0.993533
1679		14	85		0.993533
1681	16		83		0.994512
1684		80		20	0.995493
1732	20	80			0.995493
1918	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain