SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37821

Length: 2618 nt

UniGene Fasta

>sp_v3.0_unigene37821
GTCATCCTGCACCCTGGTTTGCCATCAATGATTATGATGGCGTTGGATCGCAGTGCAAAAGTGCTGGTGGTATCGATTATATTTGCACTCCTTTGCTTCGCAAGCGCTCGGAATTCTTCTCCTTGGAAAACTCTCAGTGGCAGGCCACCCGTGGTCACAGCCAATGGTGGATTGTCGGGGATTCTTCCTAGCCAAACACTGGTTGCTTATAACCTGGCAGTTAATGACAGTTTTGCCGACACTGTAATGTTTTGTGATTTGCAGTTAACGAAAGATCGGAAAGGCCTATGCCGGACAGATTTAAGATTGGAGAACAGTACAAACATAGAAGATGTATTCGGAAAGCGGACTAATTCTTATGTTGTCAATGGAAAAACAGTGTCTGGACATTTTTCTATTGACTACGATGCTAGGCAGCTCGTGGACCTGAACAGCGGTATTGCAGCATTGCAAACAGTTGGCTCCCGCCCTGCTCAATTTGACAATCTTTTCACTCTGACTGATCCATATGGAATAAAAGACGCACTTGCAGAGTCTCCAATTTGGGTAAATGTACAGTACCCATCATTTTATGAAGAGCACAACTTAAGCGCCCAATCATATCTGTTATCTCTATCAAAATCCATTGTAGTGGACTACATTTCTTCGCCCGAGGTTGGGCTTTTACAAGCCATAGTACCACAAATTACAAGGAGCAAGACAAAGATAATACTGAGGATTATGGGAAAACAAGATGTCGACCCATCGATAAATCAAACATATGGTTCCTTTTTAAACAATTTAACATTTGTGAAGACATTTGCTGATGGAATCCTAGTTCACAAGGATTACATTTGGCCTGTTGATGCAAATTTATATCTACAACCTCCTACAAGACTTGTACAAGATGCACACAACGCTGGGCTGGAAATATATGCTGCTAATTTTGCCAATGATGAATTTGGCATGACCTATAATTATAGCTATGATCCAGTAAGAGAATATCTACAGTTTGTTGACTACAATGATTTTGGAGTTGATGGCGTCCTAACAGATTTCTGTGCAACGGCAGCTGAGGCAATAGCTTGCTATGCTTTGAACAATGATAATGCATCCTCCAAAGCAGAAAACCCGATAATCATTTCTCACAACGGAGCTAGTGGCGACTACCCAGGTTCTACTGATATGGCTTATAAGGCTGCCATAAGAGATGGAGCTGACTACATTGACTGCTCTGTTCAGATAACAAAAGATGGTGTTCCTTTCTGCAGGGAATCACCAAATCTTCTCAATGGTACAACTATCACATCAAATTCAGCGTTCTATCCATCTCGCTCCACAACAGTACCGGGCATTGGAAGCACGGGCGATGGCATCTTTACGTTTGATCTCACATGGAAGGAAATTCAAACCTTGACGCCAAACATTTTTAGCCCATATGGAGAAAGCATAGGGCTTTTCCGGAACCCTGCAAATAAGAATGTGGGAAAATACATGACCTTGGCCGATTTTTTGAAATTTGCGAAGAGTCAAGAAAATGTCAATGTCCTCATCAACATACAGTATGCGCGAGCCATAGCAGCGGCACGGAAGATTGATATCATAGAGCCCACCATTTCAGTTATAAATAAGAGTGGCTACCACAACATAGCTGATAGACTAATGATAAAGTCCGATGACAGTGCTGTGCTAAGGGAGTTGAAGCAACAAACAAAATTCAAACTTGTTTACGAGGTGGAGGGAGATAATATCAGAATTCTGAATTCAACCATCAAGGAGATCAAAGAAGTTGCTGACGCCGTAACATTAAGTAGAGGTTCGGTTTTCCAGAGTCCTGGTGGTTACCTTACAGGGAACATAGATAATGTCAAGCGGTTGCACCTGCAAAATATATCAGTCTTTGTCTCTTATCTCAGAAACGAATTTACGACTTTAGCCTTCGATTATCTCTCAGATCCAACATTGGAAATTAACTCCCTTGTCAACTTCGCCCAAGTAGATGGACTCATCACAGATTTTCCAGCAACAGCAAAAGCTTATTTGGGCAACACATGCCGTGGTCGTTCCACAGCGAATGGGGATGAATATACAATGCTCCTTGTCATCCCTGGAGATTTAGAAAGGGGTCTTGATGTACAAGATATTCTACCGCGTCCACAGGCTTTAGTTACACTAAATTTTTCAGAGCCTCCATTGCCACCAACAAAAAATAACAACCCCACTCTTGCTCCTGCTCTTGCTCCAAATCAAGCCTTTTCACCAGCTCCTGGAGGTCCTGTCACCAGTACTGCTTTTCAATCTAGTCAAACTCTGTTGGTATCTCTTCTAATAGGATTCTTTGTGTTACTACTGAATTCTAACTAAGGCTACTTATTGTACACCTATCTTTTATGCCAGCGATGATATATACTGCATCGATCCTCGTTGGAATTCACGGAAGGATTCTTTCTTCTCGTATTTGACCATTGATTCTGTTTGTGACCGTTTGTAGGATTTTCATTTTTCACTTGAAACTGCATTGATCCTCATTGGAATTCACGGAAGGATTCTTTCTTCTCGTATTTAACCACTGATTTTGGTTGTGACCTTTTGTAGGACTTTCATTTTTCCGTTGAAATTAAAAAGTGATTGATAGATGT

Ace file of the UniGene sp_v3.0_unigene37821

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycerophosphoryl diester phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9SSQ8_RICCO	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%

Source	ECs	Term	Type	e value	Identity
Sma3	Glycerophosphodiester phosphodiesterase.	EC:3.1.4.46	-	6.241e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycerophospholipid metabolism	00564		6.241e-12	%

Source	Gene names
Sma3	At1g66970; At4g26690; At5g55480; At5g58050; At5g58170; B0806H07.1; D9009; F10M23.30; F1O19.5; GPDL1; GPDL2; GPDL3; GSVIVT00005092001; GSVIVT00011533001; GSVIVT00027227001; MTE17.19; NtGPDL; OJ1073_F05.25-1; OJ1104_G11.17; OJ1506_F01.22; OSJNBb0022F23.4; O

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	phosphoric diester hydrolase activity	GO:0008081	Molecular Function	-
Sma3	glycerophosphodiester phosphodiesterase activity	GO:0008889	Molecular Function	-
Sma3	glycerol metabolic process	GO:0006071	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	cell tip growth	GO:0009932	Biological Process	-
Sma3	trichome differentiation	GO:0010026	Biological Process	-
Sma3	guard cell morphogenesis	GO:0010442	Biological Process	-
Sma3	root hair cell differentiation	GO:0048765	Biological Process	-
Sma3	plant-type cell wall cellulose metabolic process	GO:0052541	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Glycerophosphoryl diester phosphodiesterase	IPR004129	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKP2

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 772 - 399

Fln protein: MIMMALDRSAKVLVVSIIFALLCFASARNSSPWKTLSGRPPVVTANGGLSGILPSQTLVAYNLAVNDSFADTVMFCDLQLTKDRKGLCRTDLRLENSTNIEDVFGKRTNSYVVNGKTVSGHFSIDYDARQLVDLNSGIAALQTVGSRPAQFDNLFTLTDPYGIKDALAESPIWVNVQYPSFYEEHNLSAQSYLLSLSKSIVVDYISSPEVGLLQAIVPQITRSKTKIILRIMGKQDVDPSINQTYGSFLNNLTFVKTFADGILVHKDYIWPVDANLYLQPPTRLVQDAHNAGLEIYAANFANDEFGMTYNYSYDPVREYLQFVDYNDFGVDGVLTDFCATAAEAIACYALNNDNASSKAENPIIISHNGASGDYPGSTDMAYKAAIRDGADYIDCSVQITKDGVPFCRESPNLLNGTTITSNSAFYPSRSTTVPGIGSTGDGIFTFDLTWKEIQTLTPNIFSPYGESIGLFRNPANKNVGKYMTLADFLKFAKSQENVNVLINIQYARAIAAARKIDIIEPTISVINKSGYHNIADRLMIKSDDSAVLRELKQQTKFKLVYEVEGDNIRILNSTIKEIKEVADAVTLSRGSVFQSPGGYLTGNIDNVKRLHLQNISVFVSYLRNEFTTLAFDYLSDPTLEINSLVNFAQVDGLITDFPATAKAYLGNTCRGRSTANGDEYTMLLVIPGDLERGLDVQDILPRPQALVTLNFSEPPLPPTKNNNPTLAPALAPNQAFSPAPGGPVTSTAFQSSQTLLVSLLIGFFVLLLNSN*

Protein Length: 773

Fln nts: GTCATCCTGCACCCTGGTTTGCCATCA_-_ATGATTATGATGGCGTTGGATCGCAGTGCAAAAGTGCTGGTGGTATCGATTATATTTGCACTCCTTTGCTTCGCAAGCGCTCGGAATTCTTCTCCTTGGAAAACTCTCAGTGGCAGGCCACCCGTGGTCACAGCCAATGGTGGATTGTCGGGGATTCTTCCTAGCCAAACACTGGTTGCTTATAACCTGGCAGTTAATGACAGTTTTGCCGACACTGTAATGTTTTGTGATTTGCAGTTAACGAAAGATCGGAAAGGCCTATGCCGGACAGATTTAAGATTGGAGAACAGTACAAACATAGAAGATGTATTCGGAAAGCGGACTAATTCTTATGTTGTCAATGGAAAAACAGTGTCTGGACATTTTTCTATTGACTACGATGCTAGGCAGCTCGTGGACCTGAACAGCGGTATTGCAGCATTGCAAACAGTTGGCTCCCGCCCTGCTCAATTTGACAATCTTTTCACTCTGACTGATCCATATGGAATAAAAGACGCACTTGCAGAGTCTCCAATTTGGGTAAATGTACAGTACCCATCATTTTATGAAGAGCACAACTTAAGCGCCCAATCATATCTGTTATCTCTATCAAAATCCATTGTAGTGGACTACATTTCTTCGCCCGAGGTTGGGCTTTTACAAGCCATAGTACCACAAATTACAAGGAGCAAGACAAAGATAATACTGAGGATTATGGGAAAACAAGATGTCGACCCATCGATAAATCAAACATATGGTTCCTTTTTAAACAATTTAACATTTGTGAAGACATTTGCTGATGGAATCCTAGTTCACAAGGATTACATTTGGCCTGTTGATGCAAATTTATATCTACAACCTCCTACAAGACTTGTACAAGATGCACACAACGCTGGGCTGGAAATATATGCTGCTAATTTTGCCAATGATGAATTTGGCATGACCTATAATTATAGCTATGATCCAGTAAGAGAATATCTACAGTTTGTTGACTACAATGATTTTGGAGTTGATGGCGTCCTAACAGATTTCTGTGCAACGGCAGCTGAGGCAATAGCTTGCTATGCTTTGAACAATGATAATGCATCCTCCAAAGCAGAAAACCCGATAATCATTTCTCACAACGGAGCTAGTGGCGACTACCCAGGTTCTACTGATATGGCTTATAAGGCTGCCATAAGAGATGGAGCTGACTACATTGACTGCTCTGTTCAGATAACAAAAGATGGTGTTCCTTTCTGCAGGGAATCACCAAATCTTCTCAATGGTACAACTATCACATCAAATTCAGCGTTCTATCCATCTCGCTCCACAACAGTACCGGGCATTGGAAGCACGGGCGATGGCATCTTTACGTTTGATCTCACATGGAAGGAAATTCAAACCTTGACGCCAAACATTTTTAGCCCATATGGAGAAAGCATAGGGCTTTTCCGGAACCCTGCAAATAAGAATGTGGGAAAATACATGACCTTGGCCGATTTTTTGAAATTTGCGAAGAGTCAAGAAAATGTCAATGTCCTCATCAACATACAGTATGCGCGAGCCATAGCAGCGGCACGGAAGATTGATATCATAGAGCCCACCATTTCAGTTATAAATAAGAGTGGCTACCACAACATAGCTGATAGACTAATGATAAAGTCCGATGACAGTGCTGTGCTAAGGGAGTTGAAGCAACAAACAAAATTCAAACTTGTTTACGAGGTGGAGGGAGATAATATCAGAATTCTGAATTCAACCATCAAGGAGATCAAAGAAGTTGCTGACGCCGTAACATTAAGTAGAGGTTCGGTTTTCCAGAGTCCTGGTGGTTACCTTACAGGGAACATAGATAATGTCAAGCGGTTGCACCTGCAAAATATATCAGTCTTTGTCTCTTATCTCAGAAACGAATTTACGACTTTAGCCTTCGATTATCTCTCAGATCCAACATTGGAAATTAACTCCCTTGTCAACTTCGCCCAAGTAGATGGACTCATCACAGATTTTCCAGCAACAGCAAAAGCTTATTTGGGCAACACATGCCGTGGTCGTTCCACAGCGAATGGGGATGAATATACAATGCTCCTTGTCATCCCTGGAGATTTAGAAAGGGGTCTTGATGTACAAGATATTCTACCGCGTCCACAGGCTTTAGTTACACTAAATTTTTCAGAGCCTCCATTGCCACCAACAAAAAATAACAACCCCACTCTTGCTCCTGCTCTTGCTCCAAATCAAGCCTTTTCACCAGCTCCTGGAGGTCCTGTCACCAGTACTGCTTTTCAATCTAGTCAAACTCTGTTGGTATCTCTTCTAATAGGATTCTTTGTGTTACTACTGAATTCTAACTAAGGCTACTTATTGTACACCTATCTTTTATGCCAGCGATGATATATACTGCATCGATCCTCGTTGGAATTCACGGAAGGATTCTTTCTTCTCGTATTTGACCATTGATTCTGTTTGTGACCGTTTGTAGGATTTTCATTTTTCACTTGAAACTGCATTGATCCTCATTGGAATTCACGGAAGGATTCTTTCTTCTCGTATTTAACCACTGATTTTGGTTGTGACCTTTTGTAGGACTTTCATTTTTCCGTTGAAATTAAAAAGTGATTGATAGATGT

Fln Alignment:

Contig37821___KTLSGRPPVVT------ANGGLSGILPSQTLVAYNLAVNDSFADTVMFCDLQLTKDRKGLCRTDLRLENSTNIED--VFGKRTNSYVVNGKTVSGHFSIDYDARQLVDLNSGIAALQTVGSRPAQFDNLFTLTDPYGIKDALAESP----IWVNVQYPSFYEEH-------NLSAQSYLLSLSKSIVVDYISSPEVG---LLQAIVPQIT------RSKTKIILR---IMGKQDVDPSINQTYGSFLNN--LTFVKTFADGILVHKDYIWPVDANLYLQPPTRLVQDAHNAGLEIYAANFANDEFGMTYNYSYDPVREYLQFVDYNDFGVDGVLTDF
B8LKP2_______________ETNKSRQPIQTSRPYNIAHRGSNGEIPEETAAAYMRAIEEG-ADFIE-TDILATKDGALICFHDVTLDDTTDVHKHKEFSDRRRTYEVQGTNVTGWFTVDFTLDEIMTLR----VKQRYEYRDQSYNWKFSIITFKEYIDIALDAPRVVGIYPEMKNPVFINQHVKWPGGKRFEDKFMETLLSYGYKGEYLSSDWLKQPIFIQSFAPTSLVYVSNFTDSPKILLIDDVTVPTQDTD----QSYWEITSDKYFDFIKKYVVGIGPWKDTIVPPDSRNYLTTPTDLVAKAHAHDLQVHPYTYRNENVFLHFNFHEDPYAEYEYWIKV--IGVDGLFTDF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
692	66		33		1.0
736		20		80	0.995493
737	20		80		0.995493
739		80		20	0.995493
1792		25	75		0.996473
2462	80	20			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain