SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37809

Length: 1692 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37809

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	COP9 signalosome complex subunit 4 [Arabidopsis thaliana] sp\|Q8L5U0.2\|CSN4_ARATH RecName: Full=COP9 signalosome complex subunit 4; Short=AtS4; Short=Signalosome subunit 4; AltName: Full=Constitutive photomorphogenesis protein 8; AltName: Full=Protein FUSC	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42970.1	COP8, FUS4, EMB134, COP14, CSN4, FUS8, ATS4 Proteasome component (PCI) domain protein chr5:17237470-17240649 REVERSE LENGTH=397	80%
RefSeq	Arabidopsis thaliana	NP_199111.1	COP9 signalosome complex subunit 4 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002320585.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR01

Fln msg: atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning,

Fln protein: SALHSAAAITDQRQKIEQYKLILASIFSSNNVQNAKAFIDHMVSDDVPLVASRQLLQIFAQELGQLEPEAHKEVAHYALAQIQPRVVSFEEQVSIMREKLAELFETEQQWSKAAQMLSGIDLDSGIRMLDDAYKLSKCVQIARLYLEDDDAVNAETFIKKASFLVSNRHDEALNLEYKVCYARILDMKRKFLEAALRYYEISQIEKRQIGDKWIDEDALQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLSDNSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPEKAEKIASRMICEDRMRGSIDQVEAVIHFEDDIEELQQWDQQIVGLCQALNDVLDSMAKKGLTIAV*

Protein Length: 397

Fln nts: AGAGCGCTCTGCACAGCGCTGCTGCCATTACTGATCAGAGGCAGAAGATAGAGCAGTACAAGCTTATTCTCGCCTCCATTTTCTCCAGCAATAATGTTCAAAATGCGAAGGCTTTCATTGATCATATGGTGTCCGACGATGTGCCGCTGGTGGCTTCGAGGCAACTGCTGCAGATATTTGCGCAGGAGTTAGGGCAGTTAGAGCCCGAGGCTCACAAGGAGGTTGCCCACTATGCTTTGGCTCAAATTCAACCCAGGGTTGTTTCCTTCGAAGAACAGGTATCCATCATGCGGGAGAAGCTTGCTGAATTATTTGAGACTGAACAACAATGGTCAAAAGCAGCTCAAATGCTCAGTGGGATTGACTTAGATTCTGGCATAAGGATGCTTGATGATGCATACAAACTATCAAAGTGTGTCCAGATTGCTCGTTTATACTTGGAGGATGATGATGCTGTTAATGCAGAGACATTTATAAAAAAGGCTTCCTTTTTAGTGAGCAATAGGCATGACGAAGCATTAAATTTAGAATATAAGGTTTGTTATGCGCGCATTTTGGATATGAAACGGAAATTTCTGGAAGCTGCACTTCGTTACTATGAGATATCACAGATTGAAAAGCGCCAAATTGGAGACAAGTGGATAGATGAGGATGCACTCCAACAAGCACTTAGTGCTGCTGTGACATGCACTATTCTTGCTGCTGCTGGGCCCCAACGCTCCAGAGTGCTTGCTACACTTTACAAGGATGAAAGATGTTCCAAACTAAAGATCTACCCAATTTTGCAGAAGGTTTATCTAGAAAGAATTCTTAGGAAGCCAGAAATTGATGCATTTGCTGAAGAACTCAAACCCCATCAGAAAGCTCTCCTATCAGACAACTCAACTGTTCTGGATCGTGCTATGATTGAGCATAATCTTCTGAGTGCAAGCAAACTTTATACAAATATAAGCTTTGAAGAGCTGGGCACATTGCTTGGCATTGCTCCTGAAAAGGCTGAGAAAATAGCTTCACGAATGATTTGTGAGGACCGCATGAGGGGTTCAATTGATCAGGTTGAGGCAGTCATACACTTTGAGGATGATATAGAAGAGCTGCAGCAGTGGGACCAACAAATTGTAGGCCTATGTCAAGCGCTGAATGATGTCTTGGATAGCATGGCTAAGAAAGGGCTGACTATAGCAGTGTAA___GAGAAAATTAGTGTGATGGGAAGATTCTTCAAGGGAATAACTGAATCACAGTATTATTTAATTTTCTTGGCTCCATTGGTGGTTGATACGTTCATTGTCTTTTAGATGAACTGACGCACGGTGGTGCTTTTTTTCCTGCTTATGATACGCTCTTTTGTAGCCAGTTTATGCTGAAAACAAGAAAGCATGGTGTAAGTTTGGAATAAATTGTCAAATTCAGAACAATTTTCTTGGCTATGTTTGTGGTTTAAACATTCTTGGTTTTTGAGATGAAGTGAAGGCCCAGTAGTGGCTTTTCTTTCGGATATGACAACTTTTTGCCTGTTTTTTTCTGAAAACAAGCATGTGTGGTGTAAGCTTGGAATGAACTGGCAAATTCGGAACAGATGACATGAGTTGGATATCATGAGACAAATAGAACCTCATTAAGTCACTAGCAAATTTGAAATATTTTTGTAAGCTGTTTGAACAAGTACAAATATAGGATAAATGCAACAGTTGC

Fln Alignment:

Contig37809___ALHSAAAITDQRQKIEQYKLILASIFSSNNVQNAKAFIDHMVSDDVPLVASRQLLQIFAQELGQLEPEAHKEVAHYALAQIQPRVVSFEEQVSIMREKLAELFETEQQWSKAAQMLSGIDLDSGIRMLDDAYKLSKCVQIARLYLEDDDAVNAETFIKKASFLVSNRHDEALNLEYKVCYARILDMKRKFLEAALRYYEISQIEKRQIGDKWIDEDALQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLSDNSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPEKAEKIASRMICEDRMRGSIDQVEAVIHFEDDIEELQQWDQQIVGLCQALNDVLDSMAKKGLTIAV
B8LR01_______________ALQSAAAITDQRQKIEQYKLILASIFSSNNVQNAKAFIDHMVSDDVPLVASRQLLQIFAQELGQLEPDAHKEIAHYALAQIQPRVVSFEEQVSIIREKLAELFETEQQWSKAAQMLSGIDLDSGIRMLDDTYKLSKCVQIARLYLEDDDAVNAEIFIKKASFLVSGSHDEALNLEYKVCYARILDMKRKFLEAALRYYEISQIEKRQIGDKWIDEDALQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPEKAEKIASRMICEDRMRGSIDQVEAVIHFEDDIEELQQWDQQIVGLCQALNDVLDSMARKGLTIAV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1148	14	85			0.993533
1150			14	85	0.993533
1281		33		66	1.0
1354		38	61		1.0
1628		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain