SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37805

Length: 1204 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37805

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative esterase [Oryza sativa Japonica Group]	-	-	2.0e-37	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Isoamyl acetate-hydrolyzing esterase, putative	-	-	3.456e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	1.707e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	1.707e-07	%
Sma3	Bisphenol degradation	00363	1.707e-07	%
Sma3	Glycerophospholipid metabolism	00564	1.707e-07	%
Sma3	Toluene degradation	00623	1.707e-07	%
Sma3	Aminobenzoate degradation	00627	1.707e-07	%
Sma3	Retinol metabolism	00830	1.707e-07	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	1.707e-07	%

Source	Gene names
Sma3	At2g38180; At3g11210; At5g45920; CPRD49; F11B9.13; F16M14.11; F9F8.1; GSVIVT00021507001; GSVIVT00029278001; GSVIVT00029281001; GSVIVT00029283001; K15I22.12; LOC_Os11g48070; Os11g0708400; OsJ_34891; PHYPADRAFT_221835; POPTRDRAFT_576967; POPTRDRAFT_656245;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Esterase, SGNH hydrolase-type, subgroup	IPR013831	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein chr3:3511101-3512899 REVERSE LENGTH=256	63%
RefSeq	Arabidopsis thaliana	NP_566387.1	GDSL esterase/lipase CPRD49 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002311219.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNG4

Fln msg:

Fln protein: MIGPRRPLFVLFGSSIVQYSFANGGWGAHLADIYARKADILVRGYSSWNSRRALQVLDQIFPKGDSQQPSLIIVYFGGNDSMGPHPSGLGPHVPLSEYIDNMRKIATYLKALSESTRLIFLSCPPVNEDMLNTDSRILSTIARTNELSRHYSEACIELCKEMGLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSIIVVEEILKVLKEEEWEPSLHWKNIPTEFGESSPYDVVASDNKSTINVSEFTFHREKQWD*

Protein Length: 257

Fln nts: GCTTGGATTCACGGCAGAAAGGAGAGAAA_-_ATGATCGGACCACGTCGGCCATTGTTTGTGCTGTTTGGTTCCTCCATTGTGCAGTACAGCTTTGCCAATGGTGGCTGGGGAGCTCATCTTGCTGACATCTATGCACGCAAGGCAGATATTCTGGTACGAGGGTATAGTTCGTGGAACTCCAGGCGGGCACTGCAAGTGTTAGATCAAATATTTCCCAAGGGTGATAGTCAACAGCCCTCATTAATTATTGTGTACTTTGGTGGAAATGATTCTATGGGGCCCCACCCATCAGGCTTAGGTCCTCATGTACCTCTTTCTGAATACATTGACAACATGAGAAAAATAGCAACTTATCTTAAGGCCCTCTCAGAATCAACACGGCTAATTTTTTTAAGTTGCCCACCCGTTAACGAGGATATGCTGAATACTGATTCAAGGATTCTTAGCACTATTGCACGGACGAATGAATTAAGTCGACATTATTCTGAAGCCTGTATAGAGCTCTGCAAGGAGATGGGTCTGAAAGTTGTCGATCTTTGGTCAGCTATTCAAACAAGGCCAGATTGGCGAACATCCTGCTTCACAGATGGTATTCATTTCTCAGCAGAGGGTAGCATTATTGTCGTTGAGGAAATTTTGAAAGTTTTAAAGGAAGAAGAATGGGAACCTTCTTTGCACTGGAAGAATATACCAACAGAATTTGGTGAATCATCACCTTACGATGTTGTTGCATCTGACAATAAGAGCACCATCAACGTTTCGGAATTTACTTTTCACAGAGAGAAGCAATGGGATTAA___ATTATGGCCTCTTATTTATCTCATAGAAAGTTTTGCTAGGAATTCATTTTTATATGAATTATTCAGCCTACTTTCTATAGGTAATGGTTATTTTCTTGATGCCAGTGTTGTAAGAATTGGTTGATATAATTACCGATTAATCTCCTTCGGGAGATAAATTTATGTTTTATTTAGGCAACGCGTCTCTGGAGATCTCTTTCAGCTAATAAATAAACAATCTTATCTTTGCATTTGATAGATGTTCCAGATTGTTTGACTGCTGGGTTTAAGTGCCATAGCTTTTGAGGATTTTGAATCCCAAACATATATCATTTTGTTCTTAATTTTCGTTGACCTTCTGTAATACTGGTGTGGATCATTATTTGTGAAAGATCTGTCAGGCTGTGGATAATGATATTCCTCTCACC

Fln Alignment:

Contig37805___MIGPRRPLFVLFGSSIVQYSFANGGWGAHLADIYARKADILVRGYSSWNSRRALQVLDQIFPKGDSQQPSLIIVYFGGNDSMGPHPSGLGPHVPLSEYIDNMRKIATYLKALSESTRLIFLSCPPVNEDMLNTD-SRILSTIARTNELSRHYSEACIELCKEMGLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSXXXXXXXXXXXXXXXWEPSLHWKNIPTEFGESSPYDVVASDNKSTINVSEFTFHREKQWD
B8LNG4_______________MVGPRRPLFVLFGSSIVQYSFANGGWGAALADIYARKADILVRGYSAWNSRRALQVIDQIFPKDAIEQPSLIIVYFGGNDSVGPHTSGLGPHVPLSEYIDNMRKIATYLKELSESTRLIFLSCPPINEDMLNNDSSSILSPIVRTNEASRHYSEACIEVCKDMDLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSVIVVEEILKVLKEAEWEPSLHWKSIPAEFGESSPYDVVASDNKSTVNVSEFTFHREKQWD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
847	11			88	0.923564
848		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain