SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37797

Length: 240 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene37797
GAGGCTGCCAGATTCTTTCGGCAGCTTGTGGAACCTCCACAGCTTGGACCTGCGTCGGTGCAAGAAGCTGGAGAGGCTGCCTAATTCCTTCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGCGTTGGTGCGATAAGTTGGAGAGGCTGCCAGATTCCTTCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGCGTTGGTGCGATAAGTTGGAGAGGCTGCCAGATTCCTTCGGCAG

Ace file of the UniGene sp_v3.0_unigene37797 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	3.0e-18	57%
FL-Next	sp=Probable disease resistance protein At5g66910; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%

Source	Gene names
Sma3	At3g04220; T6K12.16; rga S-9201;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04220.1	Disease resistance protein (TIR-NBS-LRR class) family chr3:1109118-1112188 REVERSE LENGTH=867	6.0e-21	53%
RefSeq	Arabidopsis thaliana	NP_187072.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	8.0e-21	53%
RefSeq	Populus trichocarpa	XP_002328456.1	predicted protein [Populus trichocarpa]	7.0e-19	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FKZ0

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 79 - 815

Fln protein: RLPDSFGSLWNLHSLDLRRCKKLERLPNSFGSLTNLHSLDLRWCDKLERLPDSFGSLTNLHSLDLRWCDKLERLPDSFG

Protein Length: 80

Fln nts: GAGGCTGCCAGATTCTTTCGGCAGCTTGTGGAACCTCCACAGCTTGGACCTGCGTCGGTGCAAGAAGCTGGAGAGGCTGCCTAATTCCTTCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGCGTTGGTGCGATAAGTTGGAGAGGCTGCCAGATTCCTTCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGCGTTGGTGCGATAAGTTGGAGAGGCTGCCAGATTCCTTCGGCAG

Fln Alignment:

Contig37797___RLPDSFGSLWNLHSLDLRRCKKLERLPNSFGSLTNLHSLDLRWCDKLERLPDSFGSLTNLHSLDLRWCDKLERLPDS
Q9FKZ0_______________QLPEAIGNLSRLEVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISMRKCSGCE-LPDS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
59			61	38	1.0
66		76	15	7	0.999983
92	22		77		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain