SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37788

Length: 1264 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37788

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Malic enzyme n=1 Tax=Ricinus communis RepID=B9RKI6_RICCO	-	-	78%
FL-Next	sp=Malic enzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Sma3	Malic enzyme	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Malate dehydrogenase (decarboxylating).	EC:1.1.1.39	-	1.194e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyruvate metabolism	00620		1.194e-15	%
Sma3	Carbon fixation in photosynthetic organisms	00710		1.194e-15	%
Sma3	Biosynthesis of terpenoids and steroids	01062		1.194e-15	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063		1.194e-15	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		1.194e-15	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065		1.194e-15	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066		1.194e-15	%
Sma3	Metabolic pathways	01100		1.194e-15	%
Sma3		EC:1.1.1.4-	-	1.248e-34	-

Source	Gene names
Sma3	AT4g00570; AT5G11670; At1g79750; At2g13560; At2g19900; At2g19900/F6F22.7; At4g00570; At5g11670; At5g25880; CHLREDRAFT_126820; CHLREDRAFT_147722; CHLREDRAFT_196351; CHLREDRAFT_196831; CHLREDRAFT_196832; CHLREDRAFT_196833; CytMeA; CytMeB; F19K16.27; F6N23.1

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	malic enzyme activity	GO:0004470	Molecular Function	-
Sma3	malate dehydrogenase (decarboxylating) activity	GO:0004471	Molecular Function	-
Sma3	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity	GO:0004473	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	pentose-phosphate shunt, oxidative branch	GO:0009051	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Malic oxidoreductase	IPR001891	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	GNS1/SUR4 membrane protein	IPR002076	-	-
Sma3	Malic enzyme, N-terminal	IPR012301	-	-
Sma3	Malic enzyme, NAD-binding	IPR012302	-	-
Sma3	Malic enzyme, conserved site	IPR015884	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G19900.1	ATNADP-ME1, NADP-ME1 NADP-malic enzyme 1 chr2:8592106-8595403 REVERSE LENGTH=581	79%
RefSeq	Arabidopsis thaliana	NP_179580.1	malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002324450.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRQ8

Fln msg: Distance to subject end: 264 aas, your sequence is shorter than subject: 328 - 581

Fln protein: MESTVKDARHGPTGWVVDNKSTVGGGVEDAYGEDCATEDHILTPWSVSVASGSTLLRDPHFNKGLAFTEKERDTHYLRGLLPPACLSQELQEKRLLNNIRQYQTSLQKYMALMDLEERNERLFYKVLVDNVEELLPIVYTPTVGESCQKYGSIFRRPQGLYISLKEKGKILDVLKNWNERSVNVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSSCLPITIDVGTNNENLLNDEFYIGLRQKRTTGQEYYDLLHEFMCAVKQNYWRKGSYPV*RLCQFHHAFELLAKYRTTHLVFNDDIQGTAAVVLARFKDCFIKCDW

Protein Length: 329

Fln nts: CACGAGTGGGAATTTGAGGCACAGAGTCGCAATATCAATGTTTGTCATTTGTCAGTTGAAGTGTTGGGTACTTGTTTACAGGGCTGGTTGGATTGTCGCTGCGGATTTGTTAAGAAGACAGAGATTTTTGTCTTTGATTGGTTGAGTTTGAAGTGCAAGGTAGTTGTTTTCAAGGGCTGATTGGCGTGTTAGTGGGAATTGTTAAGAAGAGGTGATTTTTGAGGGCTGTCTTGTATTCTGAATTTTCAGAGCCCTTTTGGTTCGTAAGGCAGTTTGAAA_-_ATGGAGAGCACAGTAAAGGATGCGAGACATGGACCCACTGGGTGGGTGGTGGATAACAAATCCACAGTCGGAGGTGGTGTAGAAGACGCGTATGGGGAAGATTGTGCTACTGAAGATCATATACTTACTCCATGGAGTGTCTCTGTTGCCAGTGGGTCCACGTTATTGCGAGATCCCCACTTTAACAAAGGATTAGCATTCACTGAGAAGGAGAGAGACACTCACTACCTTAGGGGCCTTCTACCGCCTGCTTGTCTGTCACAAGAACTTCAAGAAAAGAGGCTTCTGAATAACATTCGCCAATATCAAACTTCGTTGCAGAAATACATGGCACTGATGGACCTGGAGGAACGGAATGAAAGGTTGTTTTATAAAGTCTTGGTGGATAATGTGGAAGAGTTACTTCCCATAGTTTACACTCCAACTGTTGGTGAATCTTGTCAAAAATACGGGTCAATCTTCAGGCGTCCACAGGGCCTTTACATCAGCTTGAAAGAGAAAGGGAAGATCCTAGACGTTTTAAAGAATTGGAACGAAAGGAGTGTCAATGTTATAGTTGTCACTGATGGGGAACGCATTTTGGGACTTGGGGATCTTGGATGCCAGGGCATGGGCATACCTGTTGGGAAATTAGCTCTATACACTGCCCTTGGTGGAGTTCGTCCTTCATCGTGTCTTCCAATAACAATTGATGTTGGGACCAACAATGAAAATCTCTTAAATGATGAATTCTATATTGGTCTCCGACAAAAGCGCACTACTGGCCAGGAATATTATGACTTACTTCATGAGTTCATGTGTGCTGTCAAACAAAACTATTGGAGAAAAGGTTCTTATCCAGTTTGAAGACTTTGCCAATTCCACCATGCCTTTGAGTTGCTGGCAAAATACCGGACAACTCATCTAGTCTTCAATGATGATATTCAGGGGACAGCTGCAGTGGTTCTGGCAAGGTTTAAAGATTGCTTCATTAAATGTGACTGGT

Fln Alignment:

Contig37788___STVGGGVEDAYGEDCATEDHILTPWSVSVASGSTLLRDPHFNKGLAFTEKERDTHYLRGLLPPACLSQELQEKRLLNNIRQYQTSLQKYMALMDLEERNERLFYKVLVDNVEELLPIVYTPTVGESCQKYGSIFRRPQGLYISLKEKGKILDVLKNWNERSVNVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSSCLPITIDVGTNNENLLNDEFYIGLRQKRTTGQEYYDLLHEFMCAVKQNYWRKGSYPV*RLCQF-----HHAFELLAKYRTTHLVFNDDIQGTAAVVLA
B8LRQ8_______________ATLAGGVHDVYGEDRASEEQIVTPWSRTVASGNVLLRDPRYNKGLAFTDDERDYHYVRGLLPPAHMSQELQEKRLMHIIRQYNTPLQKYMALMDLEERNERLFYKLMIDHVEELLPIVYTPTVGEACQKYGTIFRRPQGLYISLKEKGKVYDVLRNWPEKNIKVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSECLPITIDVGTNNEKLLNDEFYIGLRQKRATGQEYDDLLNEFMYAAKKAYGEK------VLIQFEDFANHNAFNLLAKYRSTHLVFNDDIQGTASVVLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain