SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37769

Length: 913 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37769

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAC protein n=2 Tax=Oryza sativa RepID=Q8H045_ORYSJ	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Sma3	NAC domain protein, IPR003441	-	-	-

Source	Gene names
Sma3	131L1.6; 134P10.2; 9C20.2; AT4g10350; AT4g17980; AT4g35580; AT4g36160; At1g12260; At1g32510; At1g32770; At1g33060; At1g33280; At1g34190; At1g54330; At1g65910; At1g69490; At1g71930; At1g79580; At2g18060; At2g24430; At2g46770; At3g03200; At3g10480; At3g1050

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	specific transcriptional repressor activity	GO:0016566	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	anther dehiscence	GO:0009901	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	xylem development	GO:0010089	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Peptidase M20	IPR002933	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G17730.1	anac057, NAC057 NAC domain containing protein 57 chr3:6064379-6065813 FORWARD LENGTH=246	67%
RefSeq	Arabidopsis thaliana	NP_188400.1	NAC domain containing protein 57 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002318332.1	NAC domain protein, IPR003441, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
505			50	25	1.0
573		23		76	1.0
582		66		33	1.0
595	77		22		0.999999
615		28		71	1.0
618			25	75	1.0
624		30		69	1.0
632	75		25		1.0
646		75		25	1.0
651		37		56	1.0
654		75		25	1.0
655			75	25	1.0
657	87		12		0.999964
660		75		25	1.0
662		25		75	1.0
686	73		26		1.0
738	66		33		1.0
739	22		77		0.999999
747			12	87	0.992554
751	62		37		1.0
770	14	85			0.993533
774	14			85	0.993533
775	14			85	0.993533
776	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain