SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37759

Length: 2317 nt

UniGene Fasta

>sp_v3.0_unigene37759
GCACCAGGTCCTTCATGGGGAGACGAGATCTATCTACCGCCCCCTTTGTATTCATGGTCTCGGGAAACATAACAAGCCCTGGTCGGATCAGAGAGGCTCAGACAAAGATAGCGGGAATAAATTGGGCCGCACTAATTTGAATCCCGGCCAAATACCGCGGCGGAGGACGAGGACGACCACACTCCGGCCTAAATTCGCCGCCTTTTTTATAATTAAAAACATAAAAAGGCCGACGCCATGAACGAACCAGAGGAGCACGCAGCTGCTCAGCTCGTGCAGAAGCGTAGCCTCCCGCTGGCGGAGGTGGTTATGCCCATCTCCGTCCGTCCGCTGGCGGAGAAATGCGGCGTGGAGGCGGAGGAGGAGAGGAAGCGGGCGGCGGAGCACAAGAAGCAGCGGTCCAAGAACTGGACGCGAGCGGAGACGCTGAAACTCATCCGCCTGCGAGCGGAAATGGAGCCGCGGTTCGCGCGCAGCGGGCGGAAGTCGGAGCTGTGGGAGGAGATCGCTGAAGCGCTCCGGCGAGAGAGCGTGGTCCGGGACGCGCAGCGTTGCAGAGACAAGTGGGAGAAATTGACGGCGAGCTATAAGGAAGTCCGCGACGGGCAGCGCGACAGGCAGGACTTCCCGTTCTTTGACGAGCTGGACCCGCTGCTATCTCTCAAGCCTCAGAAGGCGGCGGCAGCGGCCGCCGCTGCCGCTACCGCCGCCGCCACGGCGGCGAATTTTGTTTCCGCCGAGACTCCCAGCAATTTTCCGACTGACGACGAGATGACGGAAGAAGGGTCCCCTGCTGGGAAGCGGAGAAAAACGACGCCAAGAGGCCTCTCGGCGACGGACCTGGACGCTGTTCGTGAGCTCCTGGAGAGCCTGGTGAGTCGGCAGCAGAGGTTTTTCGTTGATCTGCTGGACTCCATGGAGCGGAAAGAGGAAATCCGCGAGCGGATTCGTCAAGAAAAGGAGGAAAAGTGGCGGGCGGAGGAAAGAGCGCAGCGGTGTTTATTTAATAACACAATGATTGTTTTAGCCAAGAAGCTCGTCGATGGAGACTCAGGGTTTTGCGGTCGCGACCCAGGGTTTTGCGGCGCTGAAGAATTTAAACCCAAACCAGCTACCGGGGGTTCTGACCAGACTGATCACAACGGTGGCGTAATTGTTCCCAATGTTGGCGGCGTTGGCGGAGGGCCAAAGAAGAGGTCAAAGAATTGGAAGCGAGCGGAGGTTCTGCGGTTAATTAAGTTTAGGGCTGAGATGGAGTCGAGATTTGCCAAGTCCGCTCGGCGGGCGGCGCTGTGGGAAGAGCTTGCTGAGCTTTTGGGGGCGGAGGGTATTAAGCGGGATGGGAAGCAGTGCAGAGAAAAATGGGACAAGCTCATGGCAGAGTTCAAAGATGTGAGCGATGGCAAGAGGGACCGGAGCGAGAGCCCTTATTATGCAGAACTCACGGCTACCGTTGGCACTGGTCGCTCTGCCGAAGCAGGGTGAAATTTCTAGGATTAAGCGTGGGGTGAAGCTCTGCAACTTCTCTATTGGCCTAAGTAAACATTAATATAATTTCTTTCTGTAAGATCATGTATCAAAAAGGCCAGGCCAGGCCAGACCATTTAAAGACTATAGTTGGTAGTTAAGCTACTGCTCTGTACATATAGATGAATGATTTGCTTCTGTTACATATGAAGGAATGATTTGCTGTTATCTTCAAAAGGAGGATTTAGGTCATCAAGGTATGTAGTTCAAGGCAGTGTTCTGGCGGCTATGGGGCTTCTGTGTATGCTGCCTTCAGTGCCTGTGAGGCCAGCTGCTGTGTATTTTATATGGCCTGTTCAGAAACTTCCAGAAGTTGAATATAGCAATTTACCATCAAGAAATTTAGCTTGTTCTGCCCATACTTGTTTGTCTCTTTGCTGGTTCATTTCATTTCTTTTTCATGGTGTGTATACTTATGTGAGAGAAGGGTGTTGGATTGTTATTATTTTGATGTACAGCTGAAGTTTCCAGTATTCTGTAAAGGGTGAACTTGCATGAATGTTTGCTCGGGGTTAGATATTTGTCGTACAGAACGCTGCAGAAGTGCAATAAAGGGCTTCGCTGATTATCTGACTGTTGGGCCAGGGTTTAAATTCCATTAAAATATCTGACTGTTGGGCCAGGGTTTAAACTCCAGGTTTACTTCCCCATGTTAATACCAGAGGGCTTTACTGATTAAAATATCTGACTGTTGGGCCAGGGTTTAAACTACAGGTTTACTTCCCGATGTTAATACAGGGAGAAGCAAGTGTTAAGACCAGTTAAGTGGAGGACGATTCCATGTTTTGTG

Ace file of the UniGene sp_v3.0_unigene37759

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-binding factor, putative [Arabidopsis thaliana] gb\|AAP68263.1\| At1g33240 [Arabidopsis thaliana]	-	-	1.0e-11	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Myb-like domain	IPR017877	-	0.0	-
Sma3	SANT/Myb domain	IPR001005	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRE1

Fln msg: your sequence is longer than subject: 416 - 378

Fln protein: MNEPEEHAAAQLVQKRSLPLAEVVMPISVRPLAEKCGVEAEEERKRAAEHKKQRSKNWTRAETLKLIRLRAEMEPRFARSGRKSELWEEIAEALRRESVVRDAQRCRDKWEKLTASYKEVRDGQRDRQDFPFFDELDPLLSLKPQKAAAAAAAAATAAATAANFVSAETPSNFPTDDEMTEEGSPAGKRRKTTPRGLSATDLDAVRELLESLVSRQQRFFVDLLDSMERKEEIRERIRQEKEEKWRAEERAQRCLFNNTMIVLAKKLVDGDSGFCGRDPGFCGAEEFKPKPATGGSDQTDHNGGVIVPNVGGVGGGPKKRSKNWKRAEVLRLIKFRAEMESRFAKSARRAALWEELAELLGAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDRSESPYYAELTATVGTGRSAEAG*

Protein Length: 417

Fln nts: GCACCAGGTCCTTCATGGGGAGACGAGATCTATCTACCGCCCCCTTTGTATTCATGGTCTCGGGAAACATAACAAGCCCTGGTCGGATCAGAGAGGCTCAGACAAAGATAGCGGGAATAAATTGGGCCGCACTAATTTGAATCCCGGCCAAATACCGCGGCGGAGGACGAGGACGACCACACTCCGGCCTAAATTCGCCGCCTTTTTTATAATTAAAAACATAAAAAGGCCGACGCC_-_ATGAACGAACCAGAGGAGCACGCAGCTGCTCAGCTCGTGCAGAAGCGTAGCCTCCCGCTGGCGGAGGTGGTTATGCCCATCTCCGTCCGTCCGCTGGCGGAGAAATGCGGCGTGGAGGCGGAGGAGGAGAGGAAGCGGGCGGCGGAGCACAAGAAGCAGCGGTCCAAGAACTGGACGCGAGCGGAGACGCTGAAACTCATCCGCCTGCGAGCGGAAATGGAGCCGCGGTTCGCGCGCAGCGGGCGGAAGTCGGAGCTGTGGGAGGAGATCGCTGAAGCGCTCCGGCGAGAGAGCGTGGTCCGGGACGCGCAGCGTTGCAGAGACAAGTGGGAGAAATTGACGGCGAGCTATAAGGAAGTCCGCGACGGGCAGCGCGACAGGCAGGACTTCCCGTTCTTTGACGAGCTGGACCCGCTGCTATCTCTCAAGCCTCAGAAGGCGGCGGCAGCGGCCGCCGCTGCCGCTACCGCCGCCGCCACGGCGGCGAATTTTGTTTCCGCCGAGACTCCCAGCAATTTTCCGACTGACGACGAGATGACGGAAGAAGGGTCCCCTGCTGGGAAGCGGAGAAAAACGACGCCAAGAGGCCTCTCGGCGACGGACCTGGACGCTGTTCGTGAGCTCCTGGAGAGCCTGGTGAGTCGGCAGCAGAGGTTTTTCGTTGATCTGCTGGACTCCATGGAGCGGAAAGAGGAAATCCGCGAGCGGATTCGTCAAGAAAAGGAGGAAAAGTGGCGGGCGGAGGAAAGAGCGCAGCGGTGTTTATTTAATAACACAATGATTGTTTTAGCCAAGAAGCTCGTCGATGGAGACTCAGGGTTTTGCGGTCGCGACCCAGGGTTTTGCGGCGCTGAAGAATTTAAACCCAAACCAGCTACCGGGGGTTCTGACCAGACTGATCACAACGGTGGCGTAATTGTTCCCAATGTTGGCGGCGTTGGCGGAGGGCCAAAGAAGAGGTCAAAGAATTGGAAGCGAGCGGAGGTTCTGCGGTTAATTAAGTTTAGGGCTGAGATGGAGTCGAGATTTGCCAAGTCCGCTCGGCGGGCGGCGCTGTGGGAAGAGCTTGCTGAGCTTTTGGGGGCGGAGGGTATTAAGCGGGATGGGAAGCAGTGCAGAGAAAAATGGGACAAGCTCATGGCAGAGTTCAAAGATGTGAGCGATGGCAAGAGGGACCGGAGCGAGAGCCCTTATTATGCAGAACTCACGGCTACCGTTGGCACTGGTCGCTCTGCCGAAGCAGGGTGA___AATTTCTAGGATTAAGCGTGGGGTGAAGCTCTGCAACTTCTCTATTGGCCTAAGTAAACATTAATATAATTTCTTTCTGTAAGATCATGTATCAAAAAGGCCAGGCCAGGCCAGACCATTTAAAGACTATAGTTGGTAGTTAAGCTACTGCTCTGTACATATAGATGAATGATTTGCTTCTGTTACATATGAAGGAATGATTTGCTGTTATCTTCAAAAGGAGGATTTAGGTCATCAAGGTATGTAGTTCAAGGCAGTGTTCTGGCGGCTATGGGGCTTCTGTGTATGCTGCCTTCAGTGCCTGTGAGGCCAGCTGCTGTGTATTTTATATGGCCTGTTCAGAAACTTCCAGAAGTTGAATATAGCAATTTACCATCAAGAAATTTAGCTTGTTCTGCCCATACTTGTTTGTCTCTTTGCTGGTTCATTTCATTTCTTTTTCATGGTGTGTATACTTATGTGAGAGAAGGGTGTTGGATTGTTATTATTTTGATGTACAGCTGAAGTTTCCAGTATTCTGTAAAGGGTGAACTTGCATGAATGTTTGCTCGGGGTTAGATATTTGTCGTACAGAACGCTGCAGAAGTGCAATAAAGGGCTTCGCTGATTATCTGACTGTTGGGCCAGGGTTTAAATTCCATTAAAATATCTGACTGTTGGGCCAGGGTTTAAACTCCAGGTTTACTTCCCCATGTTAATACCAGAGGGCTTTACTGATTAAAATATCTGACTGTTGGGCCAGGGTTTAAACTACAGGTTTACTTCCCGATGTTAATACAGGGAGAAGCAAGTGTTAAGACCAGTTAAGTGGAGGACGATTCCATGTTTTGTG

Fln Alignment:

Contig37759___MPISVRPLAEKCGVXXXXXXXXXXXXXXXXSKNWTRAETLKLIRLRAEMEPRFARSGRKSELWEEIAEALRRESVVRDAQRCRDKWEKLTASYKEVRDGQRDRQDFPFFDELDPLLSLKPQKXXXXXXXXXXXXXXXXNFVSAETPSNFPTDDEMTEEGSPAGKRRKTTPRGLSATDLDAVRELLESLVSRQQRFFVDLLDSMXXXXXXXXXXXXXXXXXXXXXXXXXXCLFNNTMIVLAKKLVDGDSGFCGRDPGFCGAEEFKPKPATGGSDQTDHXXXXXXXXXXXXXXXXKKRSKNWKRAEVLRLIKFRAEMESRFAKSARRXXXXXXXXXXXXXXXIKRDGKQCREKWDKLMAEFKDVSDGKRDRSESPYYAELTATVGTGRSAEAG
A9NRE1_______________MPIAVRPPAERGGAEAEEERKRAAEHKKQRSKNWTRAETLKLIRLRAEMEPRFARSGRKSELWEEIAESLRRESVARDAQRCRDKWEKLTASYKEVRDGQRNRQDFPFFDELDPLLSLKPQK------AAAAAAAAAVNFVSAETPSNFPTDDEMTEEGSPAGKRRKTTPRGLTATDLDAVRELLESLVNRQQRFFVDLLESIERKEEIRERIRQEKEEKWRAEERAQRCLFNNAMIVLAKKLVDG-------DPGFCGFEEFKPKPTTGGSEQTDHDAGAAAITVVGGGGGPKKRSKNWKRAEVLRLIKFRAEMESRFAKSARRAALWEELAELLGAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDRSESPYYAELTATVGPGRSAEAG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
944	33	66			0.997452
1087		33	66		0.997452
1408	66		33		0.997452
1410	83		16		0.994512
1411	16		83		0.994512
1837		50		50	1.0
1863		17		82	1.0
1885	20	30			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1583	1599	AGGCC AGGCC AGGCC AG	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain