SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37738

Length: 1427 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37738

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-responsive transcription factor 1A n=1 Tax=Arabidopsis thaliana RepID=EF100_ARATH	-	-	7.0e-34	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	AP2/ERF domain-containing transcription factor	-	-	1.46e-40	-

Source	Gene names
Sma3	24.t00032; 24.t00040; 25.t00062; 26.t00057; ACRE1; Aa6_7580; At1g04370; At1g06160; At3g23220; At4g17490; At5g07310; At5g13330; At5g43410; At5g47220; At5g51190; At5g61590; At5g61890; B1234D02.6; B1331F11.13; BIERF3; C635ERIPDM; CDBP; CMe-ERF1; DRE; DcERF1;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQI3

Fln msg: your sequence is shorter than subject: 326 - 350

Fln protein: LFFGAGNWVSDSTRNCSPEEENFIQTALTADSVDDSRRERMTETLIAAAKSCRPSLSVSVTRHGSVECEQIPFDWGLENSVIPSVSPCLSAAWTKLPLNENDSEDMVLYGILKEAANKGWVPRTPKEEPVTEIKKEAAFPVKLEADIRQETRGTPPPKNVKKNAGRHYRGVRQRPWGKFAAEIRDSARKGARVWLGTFNTAEEAALAYDRAAYKMRGSKALLNFPLQVASGSNNTCSSVEKPKSNGEDFLQNLTSRKRERSPGDEVDSGRECRVKLEEFTRETEMMSKDMVDELLCGRMTTPPLTPSGIDMSIYNFLCPGQLMVN*

Protein Length: 327

Fln nts: TTGTTCTTCGGTGCGGGAAATTGGGTGTCTGATTCCACCAGAAATTGTAGCCCCGAAGAAGAAAACTTCATCCAAACTGCACTCACAGCTGACTCAGTCGATGACAGCAGACGGGAAAGAATGACGGAAACTCTGATCGCGGCCGCTAAGTCTTGCCGTCCCTCGCTCTCTGTCTCCGTTACTCGACATGGATCAGTTGAGTGTGAGCAAATTCCGTTTGACTGGGGACTCGAGAATTCCGTGATTCCGTCTGTGAGCCCTTGCTTATCTGCTGCCTGGACGAAGCTTCCGTTAAATGAAAACGATTCAGAGGACATGGTTTTGTACGGCATTCTCAAGGAGGCCGCCAACAAGGGATGGGTGCCTCGAACACCAAAAGAAGAGCCGGTGACGGAGATCAAGAAAGAAGCGGCTTTTCCCGTCAAACTAGAGGCAGATATCCGTCAAGAAACGAGAGGCACGCCGCCGCCGAAGAATGTAAAGAAGAATGCGGGGAGGCATTACAGGGGTGTGAGGCAGCGGCCTTGGGGAAAATTTGCGGCGGAGATAAGGGACTCTGCGCGTAAGGGCGCTAGAGTTTGGCTTGGCACCTTCAATACCGCCGAGGAGGCCGCGCTCGCATATGACCGTGCCGCTTACAAGATGCGGGGTTCTAAGGCTTTGCTTAATTTCCCGCTCCAAGTTGCTTCAGGGAGCAATAACACATGTAGCAGTGTAGAGAAACCAAAGAGTAATGGCGAAGATTTTCTTCAAAATCTCACCAGCAGGAAGAGGGAACGCAGTCCCGGTGATGAAGTCGATTCTGGCAGAGAATGCCGGGTGAAATTGGAAGAATTTACGAGGGAGACTGAGATGATGTCGAAGGATATGGTGGATGAGCTTTTATGTGGGAGGATGACAACACCGCCACTCACACCGAGTGGAATCGACATGAGCATCTACAATTTCCTCTGCCCTGGACAACTTATGGTGAACTGA___GGTTGTCCATTCTTTGGTGTATATACTTTCTCTACCATTTACAATTATTTCATTTTTTTTGTAATCCCTTCAGTTCATCTTGATCTTGATACTCTCCAAGGTATGGATTCCATGCTCCACAAAAGGTTTTTGTTTCAGTACTCTACTAAAGAAAATAATACAGAAATCTGTGTGAAAAAAGGATCTGTAATCAATGGCTAGATTTATTAGCTATTATGAATTTTCAGTATACAAGCGCCGAAATAAGGAGTGCACAGGAGATCAATTTCAGAGGCTATTCAGCAAATTGTGGAAGAGGCAGTAAGAAGGAAATGTAAATTTGTAATTCGAGAAGAGTCGGTTCGTTTGCCATCGGATGTATCATTGACCTGGTTTCTGTTTGTTCCGTCAAAGCCAAGCCAACTCTTATGACAGAATATTTAGTAATACATAGAGTCAACCCTTTATTT

Fln Alignment:

Contig37738___FFGAGNWVSDSTRNCSPEEENFIQTALTADSVDDSRRERMTETLIAAAKSCRPSLSVSVTRHGSVECEQIPFDWGLENSVIPSVSPCLSAAWTKLPLNENDSEDMVLYGILKEAANKGWVPRTPKEEPVTEIKKEAAFPVKLEADIRQETRGT---PPPKNVKKNAGRHYRGVRQRPWGKFAAEIRDSARKGARVWLGTFNTXXXXXXXXXXXXXKMRGSKALLNFPLQVASGSNNTC----SSVEKPKSNGEDFLQNLTSRKRERSPGDEVDSGRECRVKLEEFTRETEMMSKDMVDELLCGRMTTPPLTPSGIDMSIYNFLCPGQLMVN
C0PQI3_______________FFVTGNWGSDPTRNSSPEEENFIQTALTADSVDDSRRETETETLIAAVKSSRPLLSVSVTRHESFDWEKISVDWALKNSVTPSVSPCFSAAWTKLPLDENDSEDMVLYGILKEAATKGWLPRTPKEEPVTEIKKEAALPVKPDADIRQETGATPPPPPPPTVKNNAGRHYRGVRQRPWGKFAAEIRDSSRQGARVWLGTFTTAEEAALAYDRAAYKMRGSRALLNFPLQVGAEDSNTCNNNTSTIEKVESN--------LSKKRQREE-VEVQWNRQCRVRFE----DSNTMDHEMVEELLGGKLATPPLTPSGIDMSFTGFLSAGQLMVN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
322		25		75	0.996473
388	80		20		0.995493
597	40		60		1.0
601		40	60		1.0
604		40	60		1.0
613		40		60	1.0
617		40	60		1.0
622	40	60			1.0
646	20		80		0.995493
652		40		60	1.0
657	75		25		0.996473
662		25		75	0.996473
699	80		20		0.995493
1038		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain