SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37724

Length: 329 nt

UniGene Fasta

>sp_v3.0_unigene37724
CAGCGAGTGGTTGTGGTGCGTTGTGAAGAGATATGTATGTCTGGCGGACTTGTTCGTCAGAAGATGAAATACTTGCGTCCGTCTCATGGTCCGATTCATTTTCGAGCCCCATCAAGAATTCTTTGGAGGACAATCAGAGGAATGATTCCACACAAAACCAAGCGTGGTGCTGCAGCACTTGCTAGGCTAAGGGCTTTTGAAGGGGTTCCCCCACCATATGATAGGAAGAAGAGAATGGTCATTCCAGATGCTCTGAAAGTGTTGAGGCTTCAGCCAGGTCACAAGTACTGTCTGCTAGGAAGGCTTTCCAAAGAAGTTGGCTGGCATCA

Ace file of the UniGene sp_v3.0_unigene37724

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L13a n=3 Tax=Picea RepID=RL13A_PICMA	-	-	0.0	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	60S ribosomal protein L13a	-	-	6.696e-21	-

Source	Gene names
Sma3	170F8.7; At3g07110; At3g24830; At4g13170; At5g48760; CHLREDRAFT_162845; F17N18.60; GSVIVT00019003001; GSVIVT00031707001; GSVIVT00033857001; K24G6.9; K7P8.12; LOC_Os03g54860; LOC_Os03g54890; LOC_Os11g23880; MICPUCDRAFT_30605; MICPUN_93104; OJ1567_G09.119;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	ribonuclease H activity	GO:0004523	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3	Ribosomal protein L13, eukaryotic/archaeal	IPR005755	-	-
Sma3	Ribosomal protein L13	IPR005822	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24830.1	Ribosomal protein L13 family protein chr3:9064613-9065871 FORWARD LENGTH=206	81%
RefSeq	Arabidopsis thaliana	NP_189127.1	60S ribosomal protein L13a-2 [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002323772.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNL7

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 109 - 206

Fln protein: QRVVVVRCEEICMSGGLVRQKMKYLRPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALARLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWH

Protein Length: 110

Fln nts: CAGCGAGTGGTTGTGGTGCGTTGTGAAGAGATATGTATGTCTGGCGGACTTGTTCGTCAGAAGATGAAATACTTGCGTCCGTCTCATGGTCCGATTCATTTTCGAGCCCCATCAAGAATTCTTTGGAGGACAATCAGAGGAATGATTCCACACAAAACCAAGCGTGGTGCTGCAGCACTTGCTAGGCTAAGGGCTTTTGAAGGGGTTCCCCCACCATATGATAGGAAGAAGAGAATGGTCATTCCAGATGCTCTGAAAGTGTTGAGGCTTCAGCCAGGTCACAAGTACTGTCTGCTAGGAAGGCTTTCCAAAGAAGTTGGCTGGCATCA

Fln Alignment:

Contig37724___QRVVVVRCEEICMSGGLVRQKMKYLR---------PSHGPIHFRAPSRILWRTIRGMIPHKTKRGXXXXXXXXXFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWH
A9NNL7_______________QRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALARLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain