SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37716

Length: 1490 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37716

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP,ATP carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RRQ6_RICCO	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	ADP/ATP translocase	-	-	1.965e-07	-

Source	Gene names
Sma3	ANT2; At5g13490; At5g56450; GSVIVT00032194001; MICPUCDRAFT_46279; MICPUN_108589; OSJNBa0052K01.17; OSTLU_17060; Os05g0539600; OsI_20802; PHYPADRAFT_108012; PHYPADRAFT_222782; POPTRDRAFT_216234; POPTRDRAFT_561644; RCOM_0797250; T6I14_20; VITISV_003839;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	ATP:ADP antiporter activity	GO:0005471	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	purine nucleotide transport	GO:0015865	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G56450.1	Mitochondrial substrate carrier family protein chr5:22858772-22859764 REVERSE LENGTH=330	70%
RefSeq	Arabidopsis thaliana	NP_200456.1	solute carrier family 25 protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002309493.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9K8

Fln msg:

Fln protein: MIREEVWTNFPRDLMAGALMGGVAHTIVAPIERAKLLLQTQESNLAITGGKHRRFKGMLDCIFRTVRDEGARSLWRGNGSSILRHYPSVALNFSLKDLYRSVLTSGQLHEKPLSKAPSNFLAGSLAGCSTLIIIYPLDIAHTRLAADIGKREARQFKGLFHFLKTIHQKEGLKGVYRGLPASLHGMIVHRGLYFGGFDTAKDMMLVDSTHIPFWKRWIVAQGVTTSAGLLSYPLDTVRRRMMMQSGLEHRMYKNTWDCWKKIYKRESVTSFYRGAVSNMFRSTGAALILVLYDEMKNLMNWGVSSTLEHTPMKFGEVPALEHRD*

Protein Length: 326

Fln nts: GTGTACTGCTGGGTTGGAAATGGTATGAGCTGCATTTGATCATTATCTTTCTGTTTTCTGCGATTCTCTGATCTCGAAACTAATCTGAAGAAATTCACGCAATAATCATGATGATGACGACAACAAACGATTCAAATAGCTTGTTATAATATTAAGATTAGGGAAGCAAGAGATTGGAGTGATT_-_ATGATCAGGGAAGAGGTATGGACAAATTTTCCGAGGGACCTGATGGCAGGTGCCCTGATGGGAGGGGTAGCCCACACAATTGTTGCTCCAATAGAGAGGGCCAAATTGCTGTTACAGACCCAGGAGAGTAATTTGGCCATCACTGGGGGCAAACACAGAAGGTTCAAAGGAATGCTGGACTGCATATTTAGGACTGTTAGAGATGAGGGTGCGCGTTCTCTTTGGAGGGGAAATGGCAGCAGTATCCTCCGACATTACCCATCAGTGGCACTCAATTTTTCTCTCAAGGACCTTTACAGATCTGTGCTCACTTCTGGCCAGCTCCATGAGAAGCCATTGTCTAAGGCTCCAAGTAATTTCCTAGCAGGTTCTCTTGCAGGATGCTCAACCTTAATTATTATTTATCCTTTGGACATTGCGCACACACGGCTGGCAGCAGACATTGGTAAGAGAGAAGCAAGGCAGTTCAAGGGTCTCTTTCATTTCCTCAAAACTATACATCAGAAAGAGGGCTTGAAGGGAGTTTATCGTGGTCTACCCGCTTCATTGCATGGAATGATTGTTCACCGTGGTCTATACTTTGGGGGTTTTGATACTGCAAAAGACATGATGTTGGTGGACTCTACCCACATTCCATTTTGGAAGAGGTGGATTGTGGCTCAAGGAGTAACTACCTCTGCTGGTTTGCTTTCCTATCCACTGGATACAGTTAGGCGTCGCATGATGATGCAATCAGGTTTGGAACACCGAATGTATAAGAATACTTGGGACTGCTGGAAAAAGATTTACAAGAGGGAAAGTGTGACTTCTTTCTACCGTGGGGCAGTATCAAACATGTTCAGGAGCACAGGGGCAGCGTTGATACTAGTTTTGTATGATGAGATGAAGAACTTAATGAATTGGGGAGTTTCTAGCACTTTAGAGCATACTCCCATGAAGTTTGGTGAAGTTCCTGCACTAGAACATCGTGACTGA___TAACAAAAATAACCTCATCGTTGCTGTATTTTGTTGTTCAAACTAGCTAGGGCCCAGAACTATTGGTTGTTTAAAGAATCAATTTGTGTTTTTCTCATTCGTTTTGGTCCCCAAAATTTTGAATTAATTAGTGTAGCAATGTCTTTTAAGCCCTCAAAAGCATCTTAAAAGGAGGATTAGGATTCTAATAGATTGTTTGAAACACTAGTTTAATTTTCATGTCCTATTTTCCCTTTTGGCTCCCCAGATCTGAGACCCCAGACAGTTGAAATCCATTGTCACGACTTTTTAGGCCGTGAGAAATATTAATATCTTCTGCTTTCTTTGCTAC

Fln Alignment:

Contig37716___MIREEVWTNFPRDLMAGALMGGVAHTIVAPIERAKLLLQTQESNLAITGGKHRRFKGMLDCIFRTVRDEGARSLWRGNGSSILRHYPSVALNFSLKDLYRSVLTSGQLHEKPLSKAPSNFLAGSLAGCSTLIIIYPLDIAHTRLAADIGKREARQFKGLFHFLKTIHQKEGLKGVYRGLPASLHGMIVHRGLYFGGFDTAKDMMLVDSTHIPFWKRWIVAQGVTTSAGLLSYPLDTVRRRMMMQSGLEHRMYKNTWDCWKKIYKRESVTSFYRGAVSNMFRSTGAALILVLYDEMKNLMNWGVSSTLEHTPMKFGEVPALEHRD
D5A9K8_______________MIREETWANFPRDLMAGALMGGVAHTIVAPIERAKLLLQTQESNLAITGGKHRRFKGMLDCIFRTVRDEGVRSLWRGNGSSVLRHYPSVALNFSLKDLYRTMLTSGQLHEKPLSMAPSNFLAGSLAGCTTLIIIYPLDIAHTRLAADIGKREARQFKGLFHFLKTIHQKEGLKGVYRGLPASLHGMIVHRGLYFGGFDTAKDMMLQDSPHIPFWKRWIVAQGVTTSAGLLSYPLDTVRRRMMMQSGLEHRMYKNTWDCWKKIYKRESMTSFYRGAVSNMFRSTGAALILVLYDEMKNLMNWGVSSTLDHTPMKFGEVPALEHRD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
326	75		25		0.996473
327		75	25		0.996473
328			25	75	0.996473
466		14		85	0.993533
467		85	14		0.993533
487		14		85	0.993533
642		88		11	0.923564
966	73	26			1.0
1313		10		90	0.90298
1421		40	60		1.0
1455		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain