SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37685

Length: 1113 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37685 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL47 [Arabidopsis thaliana] sp\|Q8GW38.1\|ATL47_ARATH RecName: Full=RING-H2 finger protein ATL47 dbj\|BAC43674.1\| unknown protein [Arabidopsis thaliana] gb\|AAQ55274.1\| At1g23980 [Arabidopsis thaliana] gb\|AEE30463.1\| RING-H2 finger pro	-	-	3.0e-10	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G23980.1	RING/U-box superfamily protein chr1:8484879-8485988 REVERSE LENGTH=369	5.0e-13	57%
RefSeq	Arabidopsis thaliana	NP_173809.1	RING-H2 finger protein ATL47 [Arabidopsis thaliana]	6.0e-13	57%
RefSeq	Populus trichocarpa	XP_002319425.1	predicted protein, partial [Populus trichocarpa]	2.0e-12	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1W7

Fln msg: your sequence is longer than subject: 234 - 198

Fln protein: MALAQPPFAVMQVQGLFHILDSAKARFQHLTVRMLNGFRAFSKVNPVLASIAIYALCTAAGFILWVAMCFLDLAAGTCVLEAATDVIEALNEHVLPALQLLNGVLALLVGFIILVGKIHININVNGNRSRHNPNKMSTLSNRSKMIAALPKAKYRSLGRSDDANSNDSSSSSCAVCLGCIGEEDEVRILPNCRHYFHISCIDRWLLPCTVNNSSCPLCRATVINCVLRSLQAQ*

Protein Length: 235

Fln nts: CCACTCATCTTTTTTGTCCGATCCATATGTTAAATCTTCCGAAGATCCGATCACAAACGTCGTGACCTTGGCTGTCACTCAAAATTTCTGTTAAGGGGTTTTCGATTTTTATCTGGAATCTGAGATTCAGCACAAATTTCTCTAAAGGGCTTTTGGATTTTTATCTGGATCCTGAGATTCAGTACAAATTTGTGTAAAGGGCTTTTGGATTTTTATCTATTCATTGCTCCAACTAGTCTGGAACTGTGTGATTCGTGTAGAGGAATTAGAATATCTAGACTAGAGTTAATATATAATAC_-_ATGGCATTAGCACAGCCTCCATTCGCAGTGATGCAGGTGCAGGGCCTCTTCCATATTTTGGATTCTGCGAAAGCCAGATTCCAGCATTTAACAGTGCGTATGCTGAATGGCTTCCGCGCGTTTTCTAAAGTAAACCCTGTGTTGGCGTCGATTGCAATCTATGCGCTTTGCACGGCTGCAGGGTTTATCTTGTGGGTTGCAATGTGTTTCTTGGATTTGGCAGCGGGGACTTGTGTCTTGGAGGCCGCCACAGATGTGATTGAGGCTTTGAATGAGCATGTCCTCCCTGCATTGCAGCTTCTCAACGGTGTGCTTGCCCTGCTTGTGGGATTCATCATACTGGTGGGCAAGATTCATATTAATATCAATGTTAATGGCAACCGCTCCAGACATAATCCCAACAAGATGAGCACTCTGTCAAACCGCTCCAAGATGATAGCAGCACTGCCCAAAGCCAAGTACAGGAGTTTGGGAAGATCAGATGATGCAAATAGCAATGATTCATCTTCATCATCATGTGCAGTTTGTTTGGGGTGTATTGGGGAGGAGGATGAAGTCCGCATTCTTCCCAACTGCAGACACTATTTTCACATTTCTTGCATTGATCGGTGGCTTCTTCCATGTACTGTCAATAACTCTTCCTGCCCTTTGTGTAGAGCCACTGTAATTAACTGTGTCCTCCGCTCATTGCAAGCGCAATAA___AGCGCAGCACCACATCACAAGTTCGGGTCTATGGGAGACGCAAATCCTGAGAAATGGAGCCGTTTCCTCCCCTGCTTTTGGTGCCTGATTTTGCTTAAGCGGCCGTCAATGG

Fln Alignment:

Contig37685___MLNGFRAFSKVNPVLASIAIYALCTAAGFILWVAMCFLDLAAGTCVLEAATDVIEALNEHXXXXXXXXXXXXXXXXGFIILVGKIHININVNGNRSRHNPNKMSTLSNRSKMIAALPKAKYRSLGRXXXXXXXXXXXXSCAVCLGCIGEEDEVRILPNCRHYFHISCIDRWLLPCTVNNSSCPLCRATVINCVLRSLQAQ
A9P1W7_______________MLNGVRAFSKLNPALALIAIYALCTGAGFILWIAMGFLDLAAGTRVLVAAIHVMEGLNEHVLPALQLLNGSLALLMGFFILLGRIHININVNSNRSRPNPNKMSTLSCRSKMIGALPKGKYGCLRRSDDANRNDSSSSSCAICLGGIGEEDGVRILPNCRHYFHISCIDRWLLPCTVNNSSCPLCRATVIG--LHSSQAK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
751	75		25		0.996473
792	14	85			0.993533
805		14		85	0.993533
817		14	85		0.993533
818		14		85	0.993533
974		33	66		0.997452
1027	66	33			0.997452
1035			33	66	0.997452
1036			66	33	0.997452
1038		33	66		0.997452
1044			66	33	0.997452
1049	66		33		0.997452
1050	33		66		0.997452
1051	33		66		0.997452
1056			66	33	0.997452
1058		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain