SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37667

Length: 785 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37667 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	repressor protein [Glycine max] gb\|ACU13895.1\| unknown [Glycine max]	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%
Sma3	Repressor protein	-	-	2.219e-15	-

Source	Gene names
Sma3	AT5G23090; At5g08190; At5g23090; DR1; Dr1; GSVIVT00017606001; Os08g0383700; OsI_02549; OsI_29076; OsJ_27144; PHYPADRAFT_141686; PHYPADRAFT_224453; POPTRDRAFT_728778; POPTRDRAFT_836810; RCOM_1618480; T22D6_130;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	0.0	-
Sma3	Histone-fold	IPR009072	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23090.2	NF-YB13 nuclear factor Y, subunit B13 chr5:7749391-7750203 FORWARD LENGTH=159	71%
RefSeq	Arabidopsis thaliana	NP_001031927.1	protein Dr1-like protein [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002328690.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
641	11			88	0.923564
643	88			11	0.923564
647	88		11		0.923564
655	88		11		0.923564
657	88	11			0.923564
660			11	88	0.923564
661	11			88	0.923564
663			11	88	0.923564
670	80			20	0.995493
672	20		80		0.995493
673		80	20		0.995493
675	80		20		0.995493
676	20		80		0.995493
679	20		20		0.99255
681	80	20			0.995493
684	20		20		0.99255
691	80		20		0.995493
694		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain