SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37666

Length: 1036 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37666 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen Ole e 1 allergen and extensin [Medicago truncatula]	-	-	6.0e-25	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Glycine-rich protein	-	-	7.169e-13	-

Source	Gene names
Sma3	AT4g13340; AT4g22020; AT4g36230; At2g32690; At3g17050; At3g17110; At3g20470; At4g01985; At4g13340; At5g46730; CHLREDRAFT_195673; CHLREDRAFT_196816; F23E13.120; GOX4; GRP; GRP-1; GRP22; GSVIVT00038084001; HRGP gene; K14A17.12; LOC_Os03g19600; LOC_Os12g1384

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	extracellular space	GO:0005615	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	outer membrane	GO:0019867	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	hedgehog receptor activity	GO:0008158	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	ROK	IPR000600	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Ricin B lectin domain	IPR000772	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidase M12B, ADAM/reprolysin	IPR001590	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Blood coagulation inhibitor, Disintegrin	IPR001762	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3		IPR003612	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Peptidase, metallopeptidase	IPR006026	-	-
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Peptidase M11, gametolysin	IPR008752	-	-
Sma3	Glycine rich protein	IPR010800	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTZ0

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, No stop codon before M and low homology subject,

Fln protein: MPPKLCGAASVLAGLLLIIQTSCLAASTNDGGQFRSLRVVGNVFCDTCFQQQFSANSYFISGAFVALQCRINKEQEPDFSLEAQTNEYGEFKFELPPSIFHSHEQVQRCSATLLKNPQGSCKVASMAKSSAFSLKSKQGSIYTYSAGSFTYRPPSPPQLCSKDDVSQTETLSSFKKASLPKSGLKVSSASGLKVSSASGSSFKPSQLPPLLTPPPSLLPPLLPPPPSLLPPLPPLPPLPFPVTSPPPPVLLPPSSPLPTIPPFPFPLPPFLTPSPPPPLLPLPTFPPLPITLPPIPFLTPPPPPLFNLPPLPFPLPPNPFQPPAPLIPLPQNPLLPPPLI

Protein Length: 341

Fln nts: CTGCTCTGCTGCCATC_-_ATGCCTCCCAAGCTCTGCGGTGCTGCATCGGTCCTTGCAGGTCTACTCTTGATAATACAAACATCATGTCTAGCTGCCTCTACTAACGATGGCGGTCAGTTCAGGTCCCTAAGGGTCGTGGGCAACGTATTCTGCGATACTTGTTTTCAGCAACAATTCTCGGCCAACAGCTATTTCATATCAGGTGCTTTTGTAGCTCTGCAGTGCAGAATCAATAAGGAGCAGGAGCCTGACTTTAGCCTTGAAGCCCAGACTAATGAGTATGGAGAATTCAAGTTTGAACTTCCTCCATCTATCTTCCATTCACACGAACAAGTCCAGAGATGTTCAGCAACTTTGCTTAAGAATCCTCAAGGCTCCTGCAAAGTGGCTTCCATGGCCAAGTCCTCAGCATTCTCTTTGAAATCCAAGCAAGGAAGTATTTATACATATTCTGCTGGCTCATTCACTTATAGGCCACCATCTCCTCCTCAGTTGTGCTCCAAGGATGATGTTTCTCAAACTGAGACTTTGTCCTCATTCAAGAAAGCCAGTTTACCTAAATCTGGCCTCAAGGTTTCATCTGCATCAGGCCTCAAGGTTTCATCTGCATCAGGATCATCTTTTAAGCCATCACAGTTACCACCCCTGCTTACTCCACCACCTTCTCTTTTACCACCCTTGCTTCCTCCACCCCCCTCTCTTTTACCGCCCTTGCCCCCACTTCCTCCACTGCCATTTCCAGTAACCTCTCCTCCTCCACCAGTGTTGCTTCCACCATCTTCACCCTTGCCAACAATTCCCCCATTTCCATTCCCACTTCCTCCATTTCTGACACCCTCTCCTCCTCCTCCACTACTGCCCTTGCCCACGTTTCCCCCACTTCCAATCACCCTTCCTCCAATTCCATTCCTAACACCCCCTCCTCCTCCACTATTTAATTTACCACCGCTCCCATTTCCTCTCCCTCCCAACCCATTTCAACCACCAGCACCCCTGATTCCACTTCCCCAAAATCCATTGCTGCCACCACCCCTGATT

Fln Alignment:

Contig37666___SVLAGLLLIIQTSCLAASTNDGGQFRSLRVVGNVFCDTCFQQQFSANSYFISGAFVALQCRINKEQEPDFSLEAQTNEYGEFKFELPPSIFHSHEQVQRCSATLLKNPQGSCKVASMAKSSAFSLKSKQGSIYTYSAGSFTYRPPSPPQLCSKDD
A9NTZ0_______________TVLGFLLSYLALGAASNYANQEKISESVVVVGKVFCDTCLENRLSENGYVISGASIAVECALNRKGM-SVSVTGETNQNGEFKVEIPSNIFHLADQMNKCWVRPRSSPLVSCKIPSMPAPSKLKLQSNSNGVLTYSAGSFSYRHETVPASCYSED

SSRs (tot: 1)

Start position	End position	Sequence	Length
188	200	GGA GGA GGA GGA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain