SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37603

Length: 2837 nt

UniGene Fasta

>sp_v3.0_unigene37603
GAATCTATCTGTTTACTAACGGAATCTCTGCTGGTCTCCGTCTCTGTCTCTGGTTTGCAGCACTTTTTCCTTCAAAGGGAAGTTAGGACTTTTCAAGCCCGAAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGTCCCAAGAGAGAGCTCAAGTTTGCTCTCGAGTCCTTCTGGGATGGCAAAACATCTGCTGCGGATCTCGAGGTTGTGGCCAAGGAACTGAGGGCTTCGATCTGGAAGCAGATGGTAGCTGCCGGAGTCAAATTGATTCCCAGCAACACTTTCTCGTACTATGATCAGGTTCTGGACACAACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGGCTTCGCTGGCGGTGAGATTGGATTCGACACCTACTTTTCCATGGCCCGAGGAAACGCCACACTTCCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTATCACTACATCGTTCCAGAGTTGGGACCGGAGATCAAATTTGCTTACTCATCACACAAGGCAGTAGCAGAGTACAAGGAGGCTAAAGAGCTGGGCATTGATACGGTGCCCGTGATTGTAGGACCCGTGTCATACTTGCTATTGTCTAAGCCCGCAAAAGGCGTGGCAAAGACCTTCAATCTTCTTACTCTTCTTGATTCAATCCTTCCAATTTACAAGCAAGTTGTGTCTGAGTTGGAGGCAGCTGGTGCAACATGGGTCCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGTTCATCAGTTGGAAGCCTTCTCGAAGGCATATTCTTACTTGGAAGCATCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGACCATTACTGGCTTGAAGGGTATCTCTGCTATTGGGTTTGATCTTATCCGTGGAACAAAGAATCTCGAACTCATCAAGGAGATTGGTTTCCCTGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAATATCTGGGCCAATGATCTGGCTGCTTCATTGACTGTTTTGGAAAGCCTTGAGAGCATAGTTGGGAAAGATAAGCTAGTTGTCTCTACTTCCTGTTCCCTCTTGCACACGGCTGTTGATTTGGAAAATGAAACAAAGCTTGACAATGAAATTAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTATTGAAGTGGATGCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCGGCCAACGCATCTGCACAGGCTTCGAGGAGGGCGTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCCTTGAAGACTTCTGACCATCGACGAGCTACGCCAGTAAACATTCGTCTTGAACAACAACAGAAAAAGTTAAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGTAGGGTTCGTCGTGAATTCAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTGCATCAAGGAAGAAATTGCCAAGGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCTGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAGCTTCAGGGCTTTGCATTTACGGTCAATGGTTGGGTGCAGTCTTATGGATCCCGTTGTGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGCCCAAAGCCTATGACTGTCTTTTGGTCCAAGATGGCTCAGAGCATGACTGCTAGACCCATGAAGGGGATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACTTGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGACTTGGAAGCGGGTGGAATTCAGGTGATTCAAATTGACGAGGCAGCTCTTAGGGAAGGTTTGCCTCTACGCAAGGCTGAACATGCTTATTACCTGGATTGGGCTGTACACGGATTCCGCATCACTAACTGTGGTGTGCAAGATACCACTCAGATTCATACTCACATGTGCTACTCGAACTTCAATGACATTATTCATTCCATCATTGATATGGATGCCGATGTCATCACCATTGAGAATTCTCGTTCCGATGAGAAACTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGTGCCGGAATCGGTCCTGGTGTCTATGACATTCACTCTCCTCGCATTCCAAGCGTAGAAGAAATTGCAGATCGTATCAGCAAGATGCTTGCTGTGCTCGAAACAAACATTTTATGGGTTAATCCTGACTGTGGTCTGAAGACCAGGAAGTACACCGAGGTCATTCCCGCTCTAACCAACGTGATTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGAAGCGATCCCAGCTATTTTCCCAAATTCAGATTTGGGATGGTCCCAAATTCAGTTTTAAGCCATCCCAGCTATCTTCCAAATTCAATTTACAAGTACCATGAGTGTTGGAAAAATTAATTTTGTGGTTCTTTTATAAATAACTTTTATGGTTCTTATTTTCATTCTCATGAGTCGTCGATGTGGCTGAATGACCTCTCTGGAGAGGCTTCTGAGCCACATTTCTCCATCCATAATATTTTCTTATTTACAGTTGATATTAATTGAGTAAACTCTCAAAGTGTCTGTGCCTCCATTTTCCTTGAAAGGCGAGTTATTAAATGAAGTTCTTCCATCAAATATTGGACAAGAGATTTGATGGTTTGATGTCCTCCTCTGATTGCTTGAATCAGTGTTCCATTTAAAGCATGTTTTCTATCATTTTAAGTCCTT

Ace file of the UniGene sp_v3.0_unigene37603

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=5 Tax=core eudicotyledons RepID=METE_CATRO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal	IPR013215	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Cobalamin-independent methionine synthase	IPR006276	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G17920.1	ATCIMS, ATMETS, ATMS1 Cobalamin-independent synthase family protein chr5:5935771-5939195 FORWARD LENGTH=765	82%
RefSeq	Arabidopsis thaliana	NP_001078599.1	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002325856.1	vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPY2

Fln msg:

Fln protein: MASHVVGYPRMGPKRELKFALESFWDGKTSAADLEVVAKELRASIWKQMVAAGVKLIPSNTFSYYDQVLDTTAMLGAVPPRYGFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLTLLDSILPIYKQVVSELEAAGATWVQFDEPSLVMDLEVHQLEAFSKAYSYLEASSLGVNLLVETYFADIPVETYKTITGLKGISAIGFDLIRGTKNLELIKEIGFPADKILFAGVVDGRNIWANDLAASLTVLESLESIVGKDKLVVSTSCSLLHTAVDLENETKLDNEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAANASAQASRRASPRVTNEAVQKAAAALKTSDHRRATPVNIRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREFKINKISEEEYVSCIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSKMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSVEEIADRISKMLAVLETNILWVNPDCGLKTRKYTEVIPALTNVIAAAKLLRAQLASAK*

Protein Length: 768

Fln nts: GAATCTATCTGTTTACTAACGGAATCTCTGCTGGTCTCCGTCTCTGTCTCTGGTTTGCAGCACTTTTTCCTTCAAAGGGAAGTTAGGACTTTTCAAGCCCGAAAGCA_-_ATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGTCCCAAGAGAGAGCTCAAGTTTGCTCTCGAGTCCTTCTGGGATGGCAAAACATCTGCTGCGGATCTCGAGGTTGTGGCCAAGGAACTGAGGGCTTCGATCTGGAAGCAGATGGTAGCTGCCGGAGTCAAATTGATTCCCAGCAACACTTTCTCGTACTATGATCAGGTTCTGGACACAACTGCCATGCTTGGAGCTGTTCCTCCCAGGTATGGCTTCGCTGGCGGTGAGATTGGATTCGACACCTACTTTTCCATGGCCCGAGGAAACGCCACACTTCCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTATCACTACATCGTTCCAGAGTTGGGACCGGAGATCAAATTTGCTTACTCATCACACAAGGCAGTAGCAGAGTACAAGGAGGCTAAAGAGCTGGGCATTGATACGGTGCCCGTGATTGTAGGACCCGTGTCATACTTGCTATTGTCTAAGCCCGCAAAAGGCGTGGCAAAGACCTTCAATCTTCTTACTCTTCTTGATTCAATCCTTCCAATTTACAAGCAAGTTGTGTCTGAGTTGGAGGCAGCTGGTGCAACATGGGTCCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGTTCATCAGTTGGAAGCCTTCTCGAAGGCATATTCTTACTTGGAAGCATCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGACCATTACTGGCTTGAAGGGTATCTCTGCTATTGGGTTTGATCTTATCCGTGGAACAAAGAATCTCGAACTCATCAAGGAGATTGGTTTCCCTGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAATATCTGGGCCAATGATCTGGCTGCTTCATTGACTGTTTTGGAAAGCCTTGAGAGCATAGTTGGGAAAGATAAGCTAGTTGTCTCTACTTCCTGTTCCCTCTTGCACACGGCTGTTGATTTGGAAAATGAAACAAAGCTTGACAATGAAATTAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTATTGAAGTGGATGCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCGGCCAACGCATCTGCACAGGCTTCGAGGAGGGCGTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCCTTGAAGACTTCTGACCATCGACGAGCTACGCCAGTAAACATTCGTCTTGAACAACAACAGAAAAAGTTAAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGTAGGGTTCGTCGTGAATTCAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTGCATCAAGGAAGAAATTGCCAAGGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCTGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAGCTTCAGGGCTTTGCATTTACGGTCAATGGTTGGGTGCAGTCTTATGGATCCCGTTGTGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGCCCAAAGCCTATGACTGTCTTTTGGTCCAAGATGGCTCAGAGCATGACTGCTAGACCCATGAAGGGGATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACTTGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGACTTGGAAGCGGGTGGAATTCAGGTGATTCAAATTGACGAGGCAGCTCTTAGGGAAGGTTTGCCTCTACGCAAGGCTGAACATGCTTATTACCTGGATTGGGCTGTACACGGATTCCGCATCACTAACTGTGGTGTGCAAGATACCACTCAGATTCATACTCACATGTGCTACTCGAACTTCAATGACATTATTCATTCCATCATTGATATGGATGCCGATGTCATCACCATTGAGAATTCTCGTTCCGATGAGAAACTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGTGCCGGAATCGGTCCTGGTGTCTATGACATTCACTCTCCTCGCATTCCAAGCGTAGAAGAAATTGCAGATCGTATCAGCAAGATGCTTGCTGTGCTCGAAACAAACATTTTATGGGTTAATCCTGACTGTGGTCTGAAGACCAGGAAGTACACCGAGGTCATTCCCGCTCTAACCAACGTGATTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGA___AGCGATCCCAGCTATTTTCCCAAATTCAGATTTGGGATGGTCCCAAATTCAGTTTTAAGCCATCCCAGCTATCTTCCAAATTCAATTTACAAGTACCATGAGTGTTGGAAAAATTAATTTTGTGGTTCTTTTATAAATAACTTTTATGGTTCTTATTTTCATTCTCATGAGTCGTCGATGTGGCTGAATGACCTCTCTGGAGAGGCTTCTGAGCCACATTTCTCCATCCATAATATTTTCTTATTTACAGTTGATATTAATTGAGTAAACTCTCAAAGTGTCTGTGCCTCCATTTTCCTTGAAAGGCGAGTTATTAAATGAAGTTCTTCCATCAAATATTGGACAAGAGATTTGATGGTTTGATGTCCTCCTCTGATTGCTTGAATCAGTGTTCCATTTAAAGCATGTTTTCTATCATTTTAAGTCCTT

Fln Alignment:

Contig37603___MASHVVGYPRMGPKRELKFALESFWDGKTSAADLEVVAKELRASIWKQMVAAGVKLIPSNTFSYYDQVLDTTAMLGAVPPRYGFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLTLLDSILPIYKQVVSELEAAGATWVQFDEPSLVMDLEVHQLEAFSKAYSYLEASSLGVNLLVETYFADIPVETYKTITGLKGISAIGFDLIRGTKNLELIKEIGFPADKILFAGVVDGRNIWANDLAASLTVLESLESIVGKDKLVVSTSCSLLHTAVDLENETKLDNEIKSWLAFAAQKLIEVDALAKALAGQKDEXXXXXXXXXXXXXXXXPRVTNEAVQKAAAALKTSDHRRATPVNIRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREFKINKISEEEYVSCIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSKMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSVEEIADRISKMLAVLETNILWVNPDCGLKTRKYTEVIPALTNVIAAAKLLRAQLASAK
B8LPY2_______________MASHVVGYPRMGPKRELKFALESFWDGKSSAADLEAVAKGLRASIWKQMVAAGVKLIPSNTFSFYDQVLDTTAMLGAVPPRYSFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLSLLDAILPIYKQVVSELEAAGATFVQFDEPSLVMDLEAHQLEAFSKAYSYLDAASLGVNLLVETYFADIPVETYKTITGLKGISAIGFDFIRGSKTLGLIKEAGFPADKVLFAGVVDGRNIWANDLADSLSVLESLENIVGKDKLVVSTSCSLLHTAVDLVNETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAANAAALASRRASPRVTNEAVQKAAAALKTSDHRRVTPVNVRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREYKINKISEDEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSKVAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNSGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRISKMLAVLETNILWVNPDCGLKTRKYPEVVPALTNMVAAAKLLRAQLASAK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
146		83	16		0.994512
173	50		50		1.0
212	50		50		1.0
365		12		87	0.992554
443	14		85		0.993533
560			75	25	0.996473
2284	91		5		0.993509
2521	85	14			0.999981
2550	10			90	0.90298
2738		24		76	1.0
2740	4	20		75	1.0
2745	10			90	0.90298
2746	90		10		0.90298
2747			10	90	0.90298
2748			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain