SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37602

Length: 2075 nt

UniGene Fasta

>sp_v3.0_unigene37602
AAAGAAAGAAGAAATGAGAACCAATCCAATTATGCATAACTAATTTACTGTAAATTTCTCACATAGAATCTATCCTGCTGGTCTTACATCAACAACTAACAGCAATCAGTAGACTTCTCATCATTGATGATGATGATTCCAACCTGTGTCTAGAAGAGGGGAGATCTACACAGAGGGCAACTGTAGTTCTCGTAGGCGATCCACGTATCCAAACACTCCATATGGAAAACATGGCCACATTTAGCTAGCCGGCGCACTCGATCCCGCGACACGAAGTCATTGAAACAAACAATACAGACAACCACCTCCTGGCGATCAGCACTGAGACTCCCATAGTCGAAGACGGTGGGCAAATTCTCACGAACGCTCTGCTGGTCAGGGTTTGCAGGGTTGGGGGAAACAGGGGAGGAAGGCGCGAGAGAAGCGGAGAAGATGAGGCCGGAATAACGAAGACTAGCAGGATTAGTTAAAGGAGTGATGGGCCAATTGGCGAGGGGCTGATCCAGAGGAGCGCCATATTGATGGTCTGATATCCAGAAAGGGGACAGGAGCCAATTGGCCAGAAGCCTGCTCAATTCCAACACAAACACAAGGTTGAGCACTAATTGAGGGACTTCTGCATTATTGTCCCAGTAGCGTACAGGAAACAGCTTTTGGCTAGGACAGACTCTAAATGTGTTTGTAGCGTAGAAGCGGAAGGAGAAATAGAAATGGCGAAGATCATCGATGGGAAAGCAATTGCCCAGTCTATTCACAACGAGATCGCCCAAGATGTCACTGATCTCTCCAAGAAATATGGCAAGGTGCCTGGTTTGGCTGTTGTCATTGTGGGCGAGAGGAAAGATTCCCAGACTTATGTACGCATGAAGAGGAAAGCATGTGCAGAGGTTGGCATAAAGTCCATTAATGTAGACTTACCGGGAGACGTTACGGAAGAAAATCTTCTGGACACAGTTCTTGACCTGAACGCTGATCCTGAAGTACATGGCATCTTGGTCCAGCTTCCACTACCACGACACATCAATGAAGAGAAGATACTGAGTGCAATAAGCATAGAAAAGGATGTAGATGGGTTTCATCCTCTCAACATTGGCAAACTTGCAATGAAGGGAAGGGAACCTCTATTTGTTCCATGTACACCAAAGGGGTGCATAGAACTCTTACAAAGGAGTGGGGTCTCCATATCAAATAAAAGAGCAGTTGTGGTTGGAAGGAGTAACATAGTAGGATTGCCAGTTGCGTTGATGCTAATCAAATTAGATGCAACTGTGACAATGGTGCATTCTAAAACTTCAGATCCAAAGAGTATAATAAGTGAGGCGGATATCATCATAGCTGCTGCAGGACAAGCAAACATGATCAAAGGAGATTGGATCAAGCCAGGTGCTGCTGTTATTGATGTCGGGACAAATGCAGTGGATGATCCGAGCAGAAAGTCAGGCTACAGATTAGTGGGAGATGTTGCTTTTGGGGAATGCAAGGATGTTGCTGGATGGATCACTCCAGTACCAGGTGGAGTTGGACCAATGACTATTGCAATGCTTCTCAGAAATACTGCAGATGGTGCGAAGCGAGCCTGTGAAGAAGCTTCCAAAGTTGAATGACGAAATACCATGATGATATTTTCATTAAAAAGAACAGCTGCACACCAAAATTCTTGGTCTTATGACACTCCTACCTTTCAGAGAAGCGTTTTCACAATAGTTTAGTTGATCTCATGGTAATTTGATATCATTTTAAAATTTACAGCTATTGTATTGATTTTGTTCATTAATTATCAAAACTTTAAGGTCACTTATAATAAACATGTTTCCTGGGACCTCATTCAAAATTTTCCTTTTACTTACGTGAGAAATGATTTACTGTGGATAGCTTCCTAAAGGATTCAGTCGAGACTTAGTCTCAAAGTTTTTAGTGGTCTTAGTTAAACTAAATTATAATTGCAATTTACACTTTCATTTTATGTATTCTTATCAAATTGTACGTATTTCATAGGGGGCTTGGTCACATTATCATCTACTTAAATATGTGTATTTAATTGTAATTTTAATTTGTAAAAATTGATTCCACCAAAA

Ace file of the UniGene sp_v3.0_unigene37602

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Methylenetetrahydrofolate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T0V4_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	folic acid-containing compound biosynthetic process	GO:0009396	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-
Sma3	Tetrahydrofolate dehydrogenase/cyclohydrolase	IPR000672	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12290.1	Amino acid dehydrogenase family protein chr3:3919591-3921326 FORWARD LENGTH=299	76%
RefSeq	Arabidopsis thaliana	NP_187837.1	amino acid dehydrogenase family protein [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002302571.1	tetrahydrofolate dehydrogenase/cyclohydrolase [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP24

Fln msg:

Fln protein: MAKIIDGKAIAQSIHNEIAQDVTDLSKKYGKVPGLAVVIVGERKDSQTYVRMKRKACAEVGIKSINVDLPGDVTEENLLDTVLDLNADPEVHGILVQLPLPRHINEEKILSAISIEKDVDGFHPLNIGKLAMKGREPLFVPCTPKGCIELLQRSGVSISNKRAVVVGRSNIVGLPVALMLIKLDATVTMVHSKTSDPKSIISEADIIIAAAGQANMIKGDWIKPGAAVIDVGTNAVDDPSRKSGYRLVGDVAFGECKDVAGWITPVPGGVGPMTIAMLLRNTADGAKRACEEASKVE*

Protein Length: 299

Fln nts: AAAGAAAGAAGAAATGAGAACCAATCCAATTATGCATAACTAATTTACTGTAAATTTCTCACATAGAATCTATCCTGCTGGTCTTACATCAACAACTAACAGCAATCAGTAGACTTCTCATCATTGATGATGATGATTCCAACCTGTGTCTAGAAGAGGGGAGATCTACACAGAGGGCAACTGTAGTTCTCGTAGGCGATCCACGTATCCAAACACTCCATATGGAAAACATGGCCACATTTAGCTAGCCGGCGCACTCGATCCCGCGACACGAAGTCATTGAAACAAACAATACAGACAACCACCTCCTGGCGATCAGCACTGAGACTCCCATAGTCGAAGACGGTGGGCAAATTCTCACGAACGCTCTGCTGGTCAGGGTTTGCAGGGTTGGGGGAAACAGGGGAGGAAGGCGCGAGAGAAGCGGAGAAGATGAGGCCGGAATAACGAAGACTAGCAGGATTAGTTAAAGGAGTGATGGGCCAATTGGCGAGGGGCTGATCCAGAGGAGCGCCATATTGATGGTCTGATATCCAGAAAGGGGACAGGAGCCAATTGGCCAGAAGCCTGCTCAATTCCAACACAAACACAAGGTTGAGCACTAATTGAGGGACTTCTGCATTATTGTCCCAGTAGCGTACAGGAAACAGCTTTTGGCTAGGACAGACTCTAAATGTGTTTGTAGCGTAGAAGCGGAAGGAGAAATAGAA_-_ATGGCGAAGATCATCGATGGGAAAGCAATTGCCCAGTCTATTCACAACGAGATCGCCCAAGATGTCACTGATCTCTCCAAGAAATATGGCAAGGTGCCTGGTTTGGCTGTTGTCATTGTGGGCGAGAGGAAAGATTCCCAGACTTATGTACGCATGAAGAGGAAAGCATGTGCAGAGGTTGGCATAAAGTCCATTAATGTAGACTTACCGGGAGACGTTACGGAAGAAAATCTTCTGGACACAGTTCTTGACCTGAACGCTGATCCTGAAGTACATGGCATCTTGGTCCAGCTTCCACTACCACGACACATCAATGAAGAGAAGATACTGAGTGCAATAAGCATAGAAAAGGATGTAGATGGGTTTCATCCTCTCAACATTGGCAAACTTGCAATGAAGGGAAGGGAACCTCTATTTGTTCCATGTACACCAAAGGGGTGCATAGAACTCTTACAAAGGAGTGGGGTCTCCATATCAAATAAAAGAGCAGTTGTGGTTGGAAGGAGTAACATAGTAGGATTGCCAGTTGCGTTGATGCTAATCAAATTAGATGCAACTGTGACAATGGTGCATTCTAAAACTTCAGATCCAAAGAGTATAATAAGTGAGGCGGATATCATCATAGCTGCTGCAGGACAAGCAAACATGATCAAAGGAGATTGGATCAAGCCAGGTGCTGCTGTTATTGATGTCGGGACAAATGCAGTGGATGATCCGAGCAGAAAGTCAGGCTACAGATTAGTGGGAGATGTTGCTTTTGGGGAATGCAAGGATGTTGCTGGATGGATCACTCCAGTACCAGGTGGAGTTGGACCAATGACTATTGCAATGCTTCTCAGAAATACTGCAGATGGTGCGAAGCGAGCCTGTGAAGAAGCTTCCAAAGTTGAATGA___CGAAATACCATGATGATATTTTCATTAAAAAGAACAGCTGCACACCAAAATTCTTGGTCTTATGACACTCCTACCTTTCAGAGAAGCGTTTTCACAATAGTTTAGTTGATCTCATGGTAATTTGATATCATTTTAAAATTTACAGCTATTGTATTGATTTTGTTCATTAATTATCAAAACTTTAAGGTCACTTATAATAAACATGTTTCCTGGGACCTCATTCAAAATTTTCCTTTTACTTACGTGAGAAATGATTTACTGTGGATAGCTTCCTAAAGGATTCAGTCGAGACTTAGTCTCAAAGTTTTTAGTGGTCTTAGTTAAACTAAATTATAATTGCAATTTACACTTTCATTTTATGTATTCTTATCAAATTGTACGTATTTCATAGGGGGCTTGGTCACATTATCATCTACTTAAATATGTGTATTTAATTGTAATTTTAATTTGTAAAAATTGATTCCACCAAAA

Fln Alignment:

Contig37602___MAKIIDGKAIAQSIHNEIAQDVTDLSKKYGKVPGLAVVIVGERKDSQTYVRMKRKACAEVGIKSINVDLPGDVTEENLLDTVLDLNADPEVHGILVQLPLPRHINEEKILSAISIEKDVDGFHPLNIGKLAMKGREPLFVPCTPKGCIELLQRSGVSISNKRAVVVGRSNIVGLPVALMLIKLDATVTMVHSKTSDPKXXXXXXXXXXXXXGQANMIKGDWIKPGAAVIDVGTNAVDDPSRKSGYRLVGDVAFGECKDVAGWITPVPGGVGPMTIAMLLRNTADGAKRACE
B8LP24_______________MAQVIDGRAIAQSIHKEIAHDVSYLSNKCGKVPGLAVVIVGERKDSQTYVRMKRKACAEVGMKSIDVDLPGDAPEEKVLNAVLDLNANPQVHGISVQLPLPPHINEEKVLSAISIEKDVDGFHPLNIGKLAMKGREPLFVPCTPKGCIELLQRSGVSISRKRAVVVGRSNIEGLPAALLLIRLDATVTIVHSKTPDPKSIISKADIIIASLGQANMIKGDWIKPGAAVIDVGTNAVDDLTRNSGYRLVGDVAFEEVKEVAGWITPVPGGIGPMIVAMLLRNTVDGVKRACD

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
334	33			66	1.0
335	66		33		1.0
347		16		83	0.994512
378	83		16		0.994512
580	66	33			0.997452
581	66	33			0.997452
582		33	66		0.997452
586	66			33	0.997452
1107	85		14		0.993533
1108	85		14		0.993533
1304			88	11	0.923564
1305	88		11		0.923564
1307			11	88	0.923564
1313	11			88	0.923564
1334	88		11		0.923564
1353	88		11		0.923564
1368		15	84		0.999986
1369	84		15		0.999986
1371		15		84	0.999986
1375		15		84	0.999986
1377	84			15	0.999986
1378	84			15	0.999986
1380		84	15		0.999986
1382	84			15	0.999986
1384			84	15	0.999986
1385		15		84	0.999986
1386	15		84		0.999986
1510		90		10	0.90298
1571	11		88		0.999952
1633	87	12			0.992554
1635	87			12	0.992554
1636			87	12	0.992554
1730			75	25	0.996473
1944		50		50	1.0
1965			60	40	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
125	137	TGA TGA TGA TGA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain