SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37593

Length: 971 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37593

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative potassium transporter [Cymodocea nodosa]	-	-	0.0	70%
FL-Next	Isoform 2 of Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2	-	-	0.0	69%
Sma3	Potassium transporter, putative	-	-	2.46629e-43	-

Source	Gene names
Sma3	6J23.11; At1g31120; At1g60160; At1g70300; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g23640; At4g33530; At5g09400; At5g14880; B1026C12.31-1; B1026C12.31-2; CHLREDRAFT_121823; CHLREDRAFT_123407; F17M5.1; F17O7.17; F18F4.60; F1C9.1

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02050.1	KUP3, ATKUP3, ATKT4 K+ uptake transporter 3 chr3:350815-354135 FORWARD LENGTH=789	69%
RefSeq	Arabidopsis thaliana	NP_186854.1	Potassium transporter 4 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002320426.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q942X8-2

Fln msg: Distance to subject end: 344 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 296 - 640

Fln protein: SDFWKSIEDCAQVYWLWYYHGSAIVKGDGVLTPAISVLSSVSGLQVRTSKLPNSVVVVLACIILIGLFALQHFGTHRVAFIFAPIVIAWLFCICAVGIYNVVHWNPSILRALSPYYAYKFFRNNGKDKWISLGGILLCITGTEAMFADLGHFTPFSIRIAFAGVVYPCLIVSYMGQAAFLSKNFHLVDKTFYDSIPERVFWPVFVVATLAAIVGSQAVISATFSIVKQCHALGCFPRIKIVHTSRHICGRIYIPEINWILLVLCLAVTVGFRDTTLIGHAYGKCTVIYIGTFLDVM

Protein Length: 297

Fln nts: TCAGCAAGCAGCTGATGAGGAAGTTTCTACATATTATAATACAAGGCAGACAGGCTCAGAATACAGGAACCTCTCCTTTGAAGCGATTTCTGGAAAAGCATAGAAGACTGCGCACAGGTTTACTGGTTGTGGTATTACCATGGAAGTGCCATAGTAAAAGGTGATGGTGTTCTCACGCCTGCAATATCTGTTCTCTCATCAGTATCTGGGCTTCAAGTACGCACTTCAAAGCTTCCCAACAGTGTGGTGGTGGTTCTTGCCTGCATTATATTGATTGGCCTTTTTGCTCTGCAGCATTTTGGCACTCATAGGGTGGCCTTTATATTTGCACCTATTGTGATTGCTTGGCTATTCTGCATCTGCGCAGTTGGCATATACAATGTTGTTCATTGGAATCCTAGTATATTACGTGCCCTCTCTCCTTATTATGCATACAAGTTTTTTCGGAATAATGGTAAAGATAAATGGATTTCTCTCGGAGGGATACTCCTATGTATTACAGGTACAGAGGCGATGTTTGCAGATCTTGGACACTTCACTCCTTTTTCCATCCGGATTGCCTTTGCAGGAGTTGTCTATCCATGTCTGATAGTCTCTTACATGGGACAAGCTGCCTTTCTTTCGAAAAATTTTCATCTTGTTGACAAAACTTTCTACGATTCAATACCTGAGCGTGTTTTTTGGCCTGTGTTTGTAGTGGCCACCCTTGCTGCTATTGTTGGAAGCCAGGCTGTTATTTCAGCGACCTTTTCAATCGTCAAGCAATGCCATGCTTTGGGTTGTTTTCCACGTATCAAGATAGTCCACACTTCGAGGCATATCTGTGGTCGAATTTACATACCAGAAATAAATTGGATTCTCTTGGTTCTATGCCTTGCCGTTACTGTAGGATTCAGGGATACCACCTTAATTGGGCATGCTTATGGTAAGTGCACTGTCATTTATATTGGTACTTTCTTAGATGTAATGAA

Fln Alignment:

Contig37593___GSAIVKGDGVLTPAISVLSSVSGLQVRTSKLPNSVVVVLACIILIGLFALQHFGTHRVAFIFAPIVIAWLFCICAVGIYNVVHWNPSILRALSPYYAYKFFRNNGKDKWISLGGILLCITGTEAMFADLGHFTPFSIRIAFAGVVYPCLIVSYMGQAAFLSKNFHLVDKTFYDSIPERVFWPVFVVATLAAIVGSQAVISATFSIVKQCHALGCFPRIKIVHTSRHICGRIYIPEINWILLVLCLAVTVGFRDTTLIGHAYGKC--TVIYIGTFL
Q942X8-2_____________GASMMIGDGILTPAISVLSSMSGLKVRATGLHDRSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVVIWLFCIGGIGLYNIIHWNPRIYQALSPYYIVKFFRTTGKDGWIALGGILLSMTGCEAMFADLGHFTSASVRLAFITIIYPCLILQYMGQAAFLSKNILDMPTGFYDSIPGPIFWPVFVVATLAAVVGSQAVISATFSIVKQCHSLGCFPRVKVVHTSRWIYGQIYIPEINWILMVLCVAVTVAFRDITLIGNAYGVACMTVMFVTTFL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
239	66		33		0.997452
240		66	33		0.997452
241	66		33		0.997452
607		83		16	0.994512
640	16			83	0.994512
668		85	14		0.993533
670	14			85	0.993533
748	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain