SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37592

Length: 934 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37592 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor (E2F) [Chenopodium rubrum]	-	-	8.0e-34	48%
FL-Next	tr=E2F-like protein; Pinus sylvestris (Scots pine).	-	-	0.0	97%
Sma3	Transcription factor E2F	-	-	6.907e-19	-

Source	Gene names
Sma3	E2F; E2Fa1-1; E2Fa1-2; E2Fa2-1; E2Fa2-2; GSVIVT00021527001; GSVIVT00037279001; LOC_Os12g06200; OJ991214_12.14; OSIGBa0092M08.5; Os04g0416100; PHYPADRAFT_106759; PHYPADRAFT_122002; PHYPADRAFT_152406; PHYPADRAFT_177212; POPTRDRAFT_54270; POPTRDRAFT_576527;

Source	GOs	Term	Type	Identity
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	E2F Family	IPR015633	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002328241.1	transcription factor E2F [Populus trichocarpa]	9.99995e-41	50%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
562	9		90		0.999842
648		88	11		0.923564
652	88			11	0.923564
656			11	88	0.923564
660	11		88		0.923564
661	11			88	0.923564
664			88	11	0.923564
666	11			88	0.923564
667	88	11			0.923564
669	12			87	0.992554
670		12		87	0.992554
671	87		12		0.992554
763	75			25	0.996473
817		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain