SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37583

Length: 509 nt

UniGene Fasta

>sp_v3.0_unigene37583
CATACCCCTGGAGATGTAATGTCCATGGCCTGGTGCATTGCAGAATAGTGGCAGCAAATTCATTTGATCACACAACGAATTGGTTTTACGCACAGAAGAAGAAGAAGAATGGGAGTAGAGAAGGAGATTTTGAGGCCTGGCAATGGCCCCAAGCCACGTCCTGGCCAGAGCGTGACGGTCCATTGCACAGGCTACGGTAAGAATGAAGATCTGTCTCAGAAATTCTGGAGCACAAAAGATCCAGGACAGAAGCCTTTCACATTCACGATTGGGCAAGGGAGAGTTATTAAAGGATGGGATGAAGGCGTTTTGGACATGCAACTGGGAGAGATTTCTAAACTTCGGATCCACATCCTCTTGTCTACGGTCTCCAGTGTTGTGACTGCTTGAACAAACTAGCATCAAAAGTCCCTCCCTCTGAGGTGTGGCTGAAATTCAGTTTTGGTGTTCATCGGATTATGGATATGGGTCAAATGGATTTCCAGCATGGGGTATACGACCAAATTCTG

Ace file of the UniGene sp_v3.0_unigene37583

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1	-	-	8.0e-15	50%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea wilsonii.	-	-	0.0	96%
Sma3	Peptidyl-prolyl isomerase FKBP12	-	-	1.192e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	9.616e-07	-

Source	Gene names
Sma3	At5g64350; CIP3; FKBP12; GSVIVT00031212001; MICPUCDRAFT_53769; MICPUN_108688; MICPUN_62181; MSJ1.19; OJ1175_B01.15; Os02g0760300; OsI_09019; OsJ_08466; PHATRDRAFT_51271; PHYPADRAFT_177082; POPTRDRAFT_718535; RCOM_0884730; THAPSDRAFT_34265;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64350.1	FKBP12, ATFKBP12 FK506-binding protein 12 chr5:25734810-25735990 REVERSE LENGTH=112	1.00053e-42	75%
RefSeq	Arabidopsis thaliana	NP_201240.1	Peptidyl-prolyl isomerase FKBP12 [Arabidopsis thaliana]	1.99965e-42	75%
RefSeq	Populus trichocarpa	XP_002309877.1	predicted protein [Populus trichocarpa]	8.00141e-43	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C5MR42

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 18 aas, your sequence is shorter than subject: 94 - 112

Fln protein: MGVEKEILRPGNGPKPRPGQSVTVHCTGYGKNEDLSQKFWSTKDPGQKPFTFTIGQGRVIKGWDEGVLDMQLGEISKLRIHILLSTVSSVVTA*

Protein Length: 95

Fln nts: CATACCCCTGGAGATGTAATGTCCATGGCCTGGTGCATTGCAGAATAGTGGCAGCAAATTCATTTGATCACACAACGAATTGGTTTTACGCACAGAAGAAGAAGAAGA_-_ATGGGAGTAGAGAAGGAGATTTTGAGGCCTGGCAATGGCCCCAAGCCACGTCCTGGCCAGAGCGTGACGGTCCATTGCACAGGCTACGGTAAGAATGAAGATCTGTCTCAGAAATTCTGGAGCACAAAAGATCCAGGACAGAAGCCTTTCACATTCACGATTGGGCAAGGGAGAGTTATTAAAGGATGGGATGAAGGCGTTTTGGACATGCAACTGGGAGAGATTTCTAAACTTCGGATCCACATCCTCTTGTCTACGGTCTCCAGTGTTGTGACTGCTTGA___ACAAACTAGCATCAAAAGTCCCTCCCTCTGAGGTGTGGCTGAAATTCAGTTTTGGTGTTCATCGGATTATGGATATGGGTCAAATGGATTTCCAGCATGGGGTATACGACCAAATTCTG

Fln Alignment:

Contig37583___MGVEKEILRPGNGPKPRPGQSVTVHCTGYGKNEDLSQKFWSTKDPGQKPFTFTIGQGRVIKGWDEGVLDMQLGEISKLR
C5MR42_______________MGVEKEILRPGNGPKPRPGQSVTVHCTGYGKNEDLSQKFWSTKDPGQKPFTFTIGQGKVIKGWDEGVLDMQLGEVSRLR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
346	80			20	0.995493
347			25	75	0.996473
348		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
94	109	AGA AGA AGA AGA AGA A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain