SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37581

Length: 1202 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37581 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor DP1 [Populus tremula x Populus tremuloides] gb\|AAP73785.1\| DP1 [Populus tremula x Populus tremuloides]	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Transcription factor Dp-1	-	-	3.155e-08	-

Source	Gene names
Sma3	At5g02470; At5g02470/T22P11_60; At5g03415; B1144G04.29; CHLREDRAFT_206363; DP; DP1; DP2; DPa; DPb; Dp; F12E4_160; GSVIVT00021305001; GSVIVT00023246001; LOC_Os03g05760; LOC_Os10g30420; MICPUN_98766; OSTLU_38105; Os01g0678700; Os03g0152100; Os10g0440100; Os

Source	GOs	Term	Type	Identity
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Transcription factor DP, C-terminal	IPR014889	-	-
Sma3	Transcription factor DP	IPR015648	-	-
Sma3	Transcription factor DP, subgroup	IPR016556	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03415.1	DPB, ATDPB Transcription factor DP chr5:842842-845200 FORWARD LENGTH=385	71%
RefSeq	Arabidopsis thaliana	NP_850757.1	Transcription factor DP [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002326197.1	transcription factor DP, E2 dimerization partner protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABL1

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 399 - 454

Fln protein: MTQVQFDLQTILILSMLFVGASHSQSSAMFPAGSIQSMSNGVGLVSAPFLISNVPNNKNCLQRDLINELHEAGIYDYAQSLGIIQNGVIVVQNGMNTDEIFSEIWPGAGAYSLPISNGTPTTYPQFNPCPSVPLVSVDTGSNGSSSRGSDGAMARLASDNIMARLNHLDAEGDEFESPGTVGRKRRRIHRSSIGVTGGRGLRHFSMKVCKKVESKGWTTYNEVASELVAEFVNPNSTQFSQDQQQFDEKNIRRRVYDALNVLMAMDIISKEKKEIRWKGLPTTNLSDIERLKTERKRLTNRIDKKKAYLQELKEQITGLQNLVQRNERVYGSGNSPSGGVTLPFILVKTRPHATVDIEISEDMQLVHFDFNSTPFELHDDAFVLKAMRFCKTPDSNGPV

Protein Length: 400

Fln nts: AGG_-_ATGACCCAAGTGCAGTTTGATCTCCAAACGATCTTAATCTTGTCAATGCTCTTTGTGGGTGCGTCTCATTCTCAGTCTTCCGCCATGTTTCCTGCAGGTTCAATCCAGAGTATGAGCAACGGAGTTGGGCTGGTATCTGCTCCTTTCTTAATTTCAAATGTACCCAACAACAAGAATTGTCTGCAGAGGGATCTTATAAATGAGCTTCATGAAGCTGGCATCTATGATTATGCTCAGAGTCTGGGAATTATTCAGAATGGGGTTATTGTTGTGCAAAATGGGATGAATACTGATGAAATTTTTTCAGAGATATGGCCAGGGGCGGGCGCGTATTCGTTGCCTATCTCTAATGGGACACCTACCACTTATCCACAATTTAACCCATGCCCATCAGTGCCATTGGTTTCTGTGGATACTGGAAGTAATGGTTCTTCATCAAGAGGTAGTGACGGGGCGATGGCCAGACTTGCATCAGACAATATCATGGCGAGGTTGAACCATTTGGATGCTGAAGGGGACGAATTTGAGTCTCCAGGGACAGTAGGGAGGAAGAGAAGACGAATTCATCGATCCAGTATTGGTGTAACTGGTGGCAGAGGACTCCGGCATTTCAGCATGAAAGTTTGTAAGAAAGTGGAGAGCAAGGGCTGGACAACATACAACGAGGTTGCATCTGAATTAGTGGCTGAATTTGTGAATCCAAACAGCACACAGTTTTCACAAGATCAGCAACAGTTTGATGAGAAGAACATTAGGAGGAGGGTGTATGATGCACTGAACGTATTGATGGCCATGGACATAATATCAAAGGAGAAGAAGGAGATTAGATGGAAAGGGCTACCTACAACAAATCTAAGTGACATTGAAAGGCTAAAGACTGAGCGAAAGAGGTTGACAAATAGGATTGACAAAAAGAAGGCTTATTTACAGGAACTCAAAGAACAGATAACAGGCCTTCAAAATCTAGTACAGCGGAATGAAAGAGTATATGGGTCAGGCAATAGTCCTTCTGGAGGTGTGACATTACCATTCATATTGGTGAAGACTCGTCCCCATGCAACTGTTGACATTGAGATCTCAGAAGACATGCAGCTAGTTCACTTCGACTTCAATAGTACACCATTTGAATTACATGATGATGCATTTGTGCTGAAAGCAATGCGATTTTGCAAAACACCAGATAGTAATGGTCCAGTCGA

Fln Alignment:

Contig37581___MLFVGASHSQSSAMFPAGSIQSMSNGVGLVSAPFLISNVPNNKNCLQRDLINE--------LHEAGIYDYAQSLGIIQNGVIVVQNGMNTDEIFSEIWPGAGAYSLPISNGTPTTYPQFNPCPSVPLVSVDTXXXXXXXXXXXGAMARLASDNIMARLNHLDAEGDEFESPGTVG-RKRRRIHRSSIGVTGGRGLRHFSMKVCKKVESKGWTTYNEVASELVAEFVNPNXXXXXXXXXXXDEKNIRRRVYDALNVLMAMDIISKEKKEIRWKGLPTTNLSDIERLKTERKRLTNRIDKKKAYLQELKEQITGLQNLVQRNERVYGSGNSPSGGVTLPFILVKTRPHATVDIEISEDMQLVHFDFNSTPFELHDDAFVLKAMRFCKTPDSNG
D5ABL1_______________MLPRGPSRRGGSTTGPRSGVRSRKTTI----TQSHVANNPNNTSSYNNSSISNSNGVHNDPIHEAGIHSYAEGLGIVQNGAIATPIGMNATEYNPDAAKEEGEYPSTISNGMVGGYSGNLTSLPGQSVSMDSGSNCSPSRGSDVVMATPGPSSAFARLHHLDGQGEDFESPDTVGTRKKKRGPRAIGGEKGGRGLRQFSMKVCQKVESKGRTTYNEVADELVAEYANPNSALISPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPSTSPNDLEHLKADRMGLRSRIEKKMGYLQELEDQIIGLQNLVKRNERLYGSGNTPSGGVALPFILVQTRPQATVEIEISEDMQLVHFDFNSTPFELHDDAYVLKAMGFCEKPFTDG

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
579		20		80	0.995493
709		66	33		0.997452
710	33	66			0.997452
711	33			66	0.997452
712	33	66			0.997452
713		33	66		0.997452
715	33	66			0.997452
719	66		33		0.997452
720		33		66	0.997452
722		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain