SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37564

Length: 975 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37564

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	KDEL motif-containing protein 1, putative n=1 Tax=Ricinus communis RepID=B9RDP6_RICCO	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	KDEL motif-containing protein 1, putative	-	-	4.647e-20	-

Source	Gene names
Sma3	AT1G63420; At1g07220; At2g45830; At2g45840; At3g48980; At3g61270; At3g61280; At3g61290; At5g23850; B1147B12.20; GSVIVT00000391001; GSVIVT00010512001; GSVIVT00010515001; GSVIVT00024098001; GSVIVT00026807001; GSVIVT00026808001; GSVIVT00026809001; GSVIVT0002

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	adenosine deaminase activity	GO:0004000	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	Adenosine deaminase/editase	IPR002466	-	-
Sma3	Lipopolysaccharide-modifying protein	IPR006598	-	-
Sma3	Protein of unknown function DUF821, CAP10-like	IPR008539	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23850.1	Arabidopsis thaliana protein of unknown function (DUF821) chr5:8038126-8040741 FORWARD LENGTH=542	51%
RefSeq	Arabidopsis thaliana	NP_197774.1	uncharacterized protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002320120.1	predicted protein, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7X0

Fln msg: Overlapping hits, possible frame ERROR between 615 and 608, Distance to subject end: 127 aas, your sequence is shorter than subject: 325 - 492

Fln protein: MAFPWSSILTAISVQGKAIRQSISKIRLTPECSPSTVCSASSWLRLLNNSSNKDEAAMCPFYFKWIRQDLKPWAKTGITVDMVEAAKPEASFRLMVVNGRMYIETYRKCYQSRDLFTQWAIAQFLKFYPGLLPDLDLMFNCDDNPVIHRKDYNDSTGPPPPLFRYSGSEDTLDIVFPDWSFWGWPEIMSPPWEPLVKDIQTGxxxxIKWEDRDPSAYWKGNPYTGWRQELLKCNDRPHWNGRIYVQDWGREASQGFQGSKLADQCDHRFKIFMEGNAWSVSLKNILACDSTTLLITPKYYDFFLRGLVPRKHYWPVKTEKLCDSI

Protein Length: 326

Fln nts: ATGGCTTTTCCCTGGTCTTCGATATTGACTGCCATATCTGTCCAGGGAAAAGCCATCCGGCAGAGCATATCGAAGATCAGGTTAACGCCAGAGTGTTCGCCCAGCACAGTGTGTTCGGCATCATCATGGCTTCGCCTCCTCAACAACTCAAGTAATAAGGATGAAGCCGCTATGTGCCCCTTCTATTTCAAGTGGATTCGCCAGGACTTGAAGCCTTGGGCTAAGACTGGCATTACTGTAGACATGGTTGAAGCTGCAAAACCAGAGGCGTCTTTCAGGCTGATGGTTGTGAATGGCAGGATGTATATCGAAACCTATCGAAAGTGTTATCAGAGCAGAGATCTGTTTACGCAATGGGCGATTGCGCAGTTTTTGAAATTCTATCCCGGATTGCTTCCCGACTTGGACTTGATGTTCAATTGCGATGATAATCCCGTTATCCATCGGAAAGACTACAACGATTCAACAGGGCCTCCTCCCCCGCTGTTTCGTTATTCCGGGAGCGAAGATACTCTGGATATTGTCTTTCCAGATTGGTCTTTCTGGGGATGGCCAGAGATAATGTCACCACCATGGGAGCCACTAGTGAAGGATATCCAGACTGGTxxxxxxxxxxxxATCAAGTGGGAAGACAGGGATCCCTCTGCCTACTGGAAAGGCAATCCCTATACCGGATGGAGGCAGGAACTTCTGAAGTGCAACGACAGGCCCCATTGGAACGGTCGTATTTATGTTCAGGACTGGGGTAGAGAGGCAAGTCAAGGGTTTCAAGGATCCAAACTTGCAGACCAATGTGATCACAGATTCAAGATATTCATGGAAGGAAACGCGTGGTCAGTGAGCCTGAAGAATATTTTGGCGTGTGATTCCACAACTCTTTTGATCACACCAAAATACTATGACTTCTTTCTGAGAGGCCTTGTTCCACGAAAACATTACTGGCCAGTAAAAACTGAAAAACTGTGTGACTCCATCGA

Fln Alignment:

Contig37564___QSISKIRLTPECSPSTVCXXXXXXXXXXXXXXKDEAAMCPFYFKWIRQDLKPWAKTGITVDMVEAAKPEASFRLMVVNGRMYIETYRKCYQSRDLFTQWAIAQFLKFYPGLLPDLDLMFNCDDNPVIHRKDYNDSTGPPPPLFRYSGSEDTLDIVFPDWSFWGWPEIMSPPWEPLVKDIQTGxxxIKWEDRDPSAYWKGNPYTGW-RQELLKCNDRPHWNGRIYVQDWGREASQGFQGSKLADQCDHRFKIFMEGNAWSVSLKNILACDSTTLLITPKYYDFFLRGLVPRKHYWPVKTEKLCDSI
D5A7X0_______________QGISVTRKMLNCSPSTVCSASSWLPLVKKSSYKDEAAFCPFYFKWIRQDMKPWAKSGITIDMVEAAKPEASFRLTVVNGRMYIESYRKCYQSRDLFTIWGIAQFLKFYPRLLPDLDSMFNCDDNPVIHRGDYNDSTKPPPPLFRYSGSEDTFDIVFPDWSFWGWPEIRTPPWETLAKEIQNGxxxVKWEDRDPTAYWKGNPYMGQGRQDLMNCIHRRHWGGRLYNQDWDKETRQGFRQSKLSDQCHHRYKIYIEGNAWSVSLKNIMACDSPTLLITPQYYDFYLRGLVPQRHYWPIRADKKCDSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain