SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37523

Length: 1719 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37523 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH	-	-	46%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	61%
Sma3	AP2 domain-containing transcription factor	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.626e-10	-

Source	Gene names
Sma3	117M18_31; 57h21.37; AIL1; AIL3; AIL4; AIL5; AIL6; AIL7; ANT; ANTL1A; ANTL1B; AP2; AP2D10; AP2D14; AP2D17; AP2D23; AP2D4; AP2D8; AP2D9; AP2LP; ASML1; Ap2A; At1g16060; At1g51190; At1g72570; At1g79700; At3g20840; At3g54320; At4g37750; At5g10510; At5g17430;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	stem cell maintenance	GO:0019827	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Zein-binding domain	IPR007656	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10510.3	-	55%
RefSeq	Arabidopsis thaliana	NP_001190279.1	AP2-like ethylene-responsive transcription factor AIL6 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002302387.1	AP2 domain-containing transcription factor [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: Overlapping hits, possible frame ERROR between 278 and 116, your sequence is shorter than subject: 406 - 606

Fln protein: GVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKHMTRQEYVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTNAVTNFDISRYDVKRILASNTLLVGEMARLNKDQLAEPLTAEPPDQPEVPIVIHQIANEKYSAKETDYEDEDTKNNNNWQMQVQVSDGDQNGHINSCSNEPSDHGKIWDDDQKPNQCFTESQHLAALHNLMGLDHATTTERNGESSNNNNNNNPLLTDISASPTSPGASMGREEHEEEAAAAMSPNTQNENGLFFSSKQPALQINNALSSWMTQAARPAINSMAHHIPMFASWTDT*

Protein Length: 407

Fln nts: ATGGGGTGCCTCGAAAATCCATTGATACTTTTGGTCAACGGACATCTCAATACCGTGGTGTCACAAGGCATCGGTGGACAGGGCGCTACGAGGCTCACTTGTGGGATAACAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGCACATGACCAGGCAGGAGTACGTTGCCAATTTAAGGAGGAAGAGTAGTGGATTTTCCAGGGGCGCATCTATGTACCGAGGAGTAACAAGGCACCACCAGCACGGGAGATGGCAGGCGCGCATTGGCCGAGTTGCAGGGAACAAGGATCTCTACCTGGGAACTTTCAGTACCCAGGAAGAAGCGGCGGAAGCCTACGACATCGCCGCCATCAAGTTCAGGGGCACAAATGCTGTCACAAATTTTGATATCAGTAGATATGACGTGAAACGTATCTTGGCAAGCAACACCTTGCTGGTCGGCGAGATGGCCAGACTCAACAAGGATCAGCTGGCGGAGCCATTAACAGCGGAGCCACCGGATCAGCCCGAGGTTCCTATCGTAATTCATCAAATTGCCAACGAAAAATACAGCGCCAAGGAAACCGATTATGAAGACGAGGACACCAAGAACAACAACAACTGGCAAATGCAGGTGCAGGTGAGCGATGGCGATCAGAACGGTCACATTAATTCTTGTTCCAATGAGCCTTCCGACCATGGCAAAATCTGGGATGATGACCAGAAGCCCAACCAGTGCTTCACTGAATCTCAACACCTGGCAGCTCTTCATAACCTAATGGGACTCGATCATGCGACCACCACAGAAAGAAACGGGGAATCATCAAACAACAATAATAATAACAACCCATTATTGACAGATATCTCGGCATCTCCCACAAGCCCAGGGGCTTCAATGGGGCGCGAGGAACATGAAGAAGAGGCCGCGGCGGCCATGAGCCCCAATACCCAGAACGAGAATGGCCTCTTCTTTTCCTCGAAACAGCCGGCCTTACAGATCAACAATGCGCTGAGCTCTTGGATGACACAGGCCGCGAGACCTGCAATTAATTCCATGGCTCATCACATCCCAATGTTCGCATCCTGGACCGATACGTAGTAACATACCCCTCCAAGAAATCAATAATGGTAGCCATCTGAACAAAAAAAAAAAAACCTTGTCACCATTATAGATTATGAACGGTAAATTGCAAAAATCCATTTTGAGGCGCCGGATTTTGATCACCCTCGATTTTACAGGCTCTACTGCCCGCTTGCCTGCGCCGGAATTGTTGCAATTCACGTAACAAATTTACATAGAAATGATCATATGTACACAGGAGTCTCAAGTATTTGCCAGCAACATTGTCCTGCTTTTGCTAACAACGAACATGTATTTTGACATTGTATCTACAGATTTTGTGAAGCTGGAATCATTTTTCATTTTAGCACTTTGGATTCAACCTCTCCATCTTTTTGCTGTAACTGAAAATGGACAGAAAAACACGTCCTTCCTACTGTGAGAAAAAACAAATCTGGCCGTATAATTTTTATTCCCAGTACTTGCAGCTAGATTTTTCACTCAGATCCTTGGCTCATTCTTTAAGAGCCTGTTCAGCT

Fln Alignment:

Contig37523___VPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRQEYVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXAYDIAAIKFRGTNAVTNFDISRYDVKRILASNTLLVGEMARLNK--DQLAEPLTAEPPDQPE--VPIVIHQIANEKYSAKETDYED------EDTKNNNN------------WQMQVQVSDGDQNGHINSCSNEPSDHGKIWDDDQKPNQCFTES------QHLAALHNLMGLDHATTTERNGESSXXXXXXNPLLTDISASPTSPGASMGRXXXXXXXXXAMSPNTQNENG--------------------LFFSSKQPALQI------NNALSSWMTQ-------AARPAINSMAHHIPMFASWTD
Q76H96_______________VPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRQEYVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDISKYDVQRICSSSTLIAGDLAKRNKEIEQSSEP-SGDSPLQIEAAAPLQIEAAHNSQSRSHNDNAKDGNNSTSNDSHHNNNVVGSMSDKIAQDWQLMDSNSEQDQHKVFNNWVVE--------NEDRKPDQSFIESLQLGPHSHSAVLHDLIGLDSSTAADSDQSNNEETSR---LLTDISGGNNSL-LTMSNASNTGPVESPVNSASENEEGHHRKIPVYDNMMPAGEFPQALFFSSPQQASKLVKYENGSTTLSPWMIPPNTVPPLQSRP--NLSVGHLPMFALWNE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
561		50		50	1.0
681		50		50	1.0
746	50		50		1.0
883		12		87	0.992554
927	90		10		0.90298
979		10		90	0.90298
980		10		90	0.90298
981		10	90		0.90298
982	10			90	0.90298
990		90		10	0.90298
994	10		90		0.90298
1062	75		25		1.0
1152			85	14	0.993533
1182		11		88	0.923564
1184		11		88	0.923564
1405		33		66	0.997452
1429		33	66		0.997452
1444		66		33	0.997452
1501		75		25	0.996473
1609	75	25			0.996473
1610	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
978	989	GTT GTT GTT GTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain