SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37432

Length: 994 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37432

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative mitochondrial carrier protein [Arabidopsis thaliana]	-	-	1.4013e-45	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Mitochondrial substrate carrier family protein, putative, expressed	-	-	6.427e-09	-

Source	Gene names
Sma3	At2g35800; GSVIVT00018239001; LOC_Os11g01270; LOC_Os12g01240; Os11g0103700; Os12g0103000; OsJ_32642; PHYPADRAFT_182927; PHYPADRAFT_20805; POPTRDRAFT_765330; POPTRDRAFT_833847; RCOM_0713440;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35800.1	mitochondrial substrate carrier family protein chr2:15044437-15048352 FORWARD LENGTH=823	51%
RefSeq	Arabidopsis thaliana	NP_850252.1	mitochondrial substrate carrier family protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002316345.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8H3

Fln msg:

Fln protein: MARIPRSGQMQQGFIDREKLSSVQEFFHYTEMEGRKLFQELDRDGDGHATLSDIEEAIRRRKLPPFYASEIIKYAKKHIWLSKSFGWDEFSSLIKEKEPKMLSAFNSVSLCNCGTIHKKKLKALLQSASLPATERNVTAMLHFLNADKEDSVSYSQFRNFMLFVPTELIVNDPWTIWFEAATRRSTDMLLQTVPAVRKNRTLTRYTQDTWKIGSLVSRLSIASPLSIASPLQTLSHLATQMWKMRLLTSVNHK*

Protein Length: 255

Fln nts: CCAGTCATATTTGGTTCTCCTTGCTTCTTCCAAAAACTGTTCGACGAAAGCCAAAAAATACCAGTCTTCGCAAGTCTCCAAGGGGGACCTAATGCTTTTCTTTCAGAAGCTGTGAAGAGTCAATCTGAAAGAATATCTACAGCCATCAAACTGCCTACATTAGCAATCTCAACTGCGTCCTTACCGGGATTT_-_ATGGCTAGGATTCCTCGAAGTGGCCAAATGCAGCAAGGATTTATAGATAGAGAAAAACTATCTTCTGTCCAAGAGTTTTTCCATTATACTGAAATGGAAGGAAGAAAGCTTTTTCAGGAGCTGGATAGAGATGGGGATGGTCATGCAACATTGTCTGATATCGAAGAGGCGATCAGAAGGAGAAAGCTTCCCCCATTCTATGCTTCTGAAATCATAAAATATGCAAAAAAACACATTTGGCTTTCAAAATCTTTTGGTTGGGATGAATTCTCTTCCCTGATTAAGGAAAAGGAACCTAAGATGCTCTCTGCTTTTAACTCTGTCAGTCTCTGCAACTGTGGAACAATTCATAAGAAAAAGCTGAAAGCTTTACTGCAGAGTGCGAGTCTTCCAGCAACTGAAAGGAATGTTACAGCAATGCTGCATTTTCTCAATGCAGACAAGGAAGATTCGGTATCATACAGTCAGTTTCGCAACTTCATGTTGTTTGTACCCACAGAACTCATTGTTAATGATCCATGGACAATATGGTTCGAGGCAGCTACAAGAAGGTCCACTGACATGCTGTTACAAACAGTACCTGCAGTAAGAAAGAATCGAACACTGACAAGATATACTCAAGATACATGGAAGATTGGCTCCTTGGTGTCGAGACTTTCTATTGCAAGTCCACTTTCTATTGCAAGTCCACTTCAAACATTGTCTCATCTTGCAACACAAATGTGGAAAATGAGACTCCTCACAAGCGTAAACCACAAATGA___GTGTATAGCAGAAGCTAGAATTGCTGCTTTTTCCAGTTTT

Fln Alignment:

Contig37432___MARIPRSGQMQQGFIDREKLSSVQEFFHYTEMEGRKLFQELDRDGDGHATLSDIEEAIRRRKLPPFYASEIIKYAKKHIWLSKSFGWDEFSSLIKEKEPKMLSAFNSVSLCNCGTIHXXXXXXXXXXXXXPATERNVTAMLHFLNADKEDSVSYSQFRNFMLFVPTELIVNDPWTIWFEAATRRSTDMLLQTVPAVRKNRTLTRYTQDTWKIGSLVSRLSIASPLSIASPLQTLSHLATQMWKMRLLTSVNHK
D5A8H3_______________MARIPRGGQMQQGFPDREKLFSAQEFFHYTEIEGRRLFQELDRDGDGHATLSDIEDAIRRRKLPPFYASEIIKSAKKHYWLSRSFGWAEFSSLIKEKEPKMLSAFNSVRLCNCGTIHKSNLKALLQSASLPATERNVTAMLNFLNSDKEDSVSYSQFRNFMLFVPTDLIVNDPWTIWFEAATRTSTDMLLQTVPAVGKNRTLPSYTPDIWKIGPLV------SSLSIASPLQRISHLAAQMWKMRLLTRVNHE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
768	83			16	0.994512
769	83			16	0.994512
894	88		11		0.999952
934		81		18	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain