SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37408

Length: 2921 nt

UniGene Fasta

>sp_v3.0_unigene37408
CGCAGTTTCAAACACCGTGCATTAATGGCAGGCGAATAAAAGAATGTGGGTGGTTTGACTGGAAGCATGCAAATACATCAATCCCGTAAGGTTAAAACCCAGCGGTCACATTTTAGTGGTCTTTTTGGGTTTTATCTCATGTTTACACTGAGGGTTTAATCTTTCCAGTAAAATGTTTATCTGTCATATGACTTGACCTGAGTCCTTCTGTCACTTTATCTCGTCCCTGTGCAAAGCTTTTTCCGTAATATTTTATTTCTGCATTTTCTTGCTCTGCTTTTTCCAGTGGTGTGAGGTTCTATTCCCTCTGCTAAACTCAGTGCAGCAGTGAATCCGTGTCGAAAAATTTGAAAGCTAGCCAGCAGTGTGTCTCGCATGGTACCCTCAGTCGGTGAGCTGTCTGTCCGCATGGACACCACTTGCAGCTCGTTGCTTCGAGAACTTCAGCATATTTGGGATGAGATCGGAGAAACTGATGTCGAGAGAGACAAGATGCTTTTAGAACTGGAGAAAGAGTGTTTGGAGGTTTACTGTAGGAAGGTAGACCAGGCTAGCCATGCAAGGGCACGGCTTCATCAGTCACTTGCGGACAAAGAAGCAGAGCTTGCCTTTCTCATAGCTTCCATAGGAGACAGGAATCTTCACTCTCAGCCAGAGAAACGATCAGGAACCTTGAAAGAGCAGCTTGCAATCATCACCCCACAATTAGAAGAGTTGCGATTAAGGAAGGAGGAGCGCATTAAACAGTTTACAGAAGTGAAAGGACAAATTCAAAAAATATCTGGAGAAATTTCAGGGTATTCTCAACGAAGTGATGTTGTGCTGAACTCAATCAATGGGGAAGAAGATGACTTGTCACTTAGAAAATTAGATGAATATCATGCATATCTTCAAGCACTTCAGAAAGAGAAGAGTGACCGCCTTCACAAGGTATTGGAATATGTAAATGAGGTGCATAGACTTTGTGCGGTACTTGGTATGGACTTCTGGAAGACTGTTAGTGAAGTACATCCAAGCTTGCCTGAGTCAGCACCTGGACAGACAAAAAATATTAGCAACAAGACATTGGAGGGATTATCACAGACTATTCAGACATTGAAAGATGAAAAGAAACTTCGAATTCAAAAGTTGCAAGATCTTGGAACATCTTTGGTTGAACTTTGGAACCTAATGGATGCTTCAATGGAAGAAAGAGAACGATATAGAAATGTTGTATGCAATCTTGGAGCATTAGATAATGAAGTTACAAGTGCAGGTGCTCTTGCACTTGATATCATTGAGGAGGCAGAGATAGAAGTTGAGAGATTGAATCTGTTGAAGGCAAGCAAAATGAAAGAATTGGTGTTGAAGAAGAGGATAGAGTTGGAGGAAATATGCAGACGAGCACATATGGAACCAGACGCGAGCACAGCACCGGAGAAATCCAATGCCCTGATTGATGCTGGTATGGTGGACCCTTCTGAGCTTCTAGCTAATATTGAATCACAAATATTGAAAGCGAAGGAAGATGTTGCAAGCAGGAAAGAAATAATGGATAGAATAGAAAAGTGGCTTGCGGCTTGTGAAGAGGAAAGCTGGCTTGAAGACTACAACAGGGATGAGAATAGATACAGTGCTAGCAAGGGTGCCCACATAAATCTCAAACGTGCGGAGCGGGCTCGAGTAACTGTGAACAAAATTCCTGCTCTTGTTGAGAATTTGAAGGCTAAAACACGTGCTTGGGAAGAAGAAAAAGACATGCCATTTGTATATGATGGCATACGGCTGCTGGCAATGCTAGAGGAGTATACCTTCGCGAGACAAGAAAGAGAGGAGCAAAAGAAACGGTTCCGGGATCAGAAGCGGCTACAAGAGCAATTTCTAACAGAGCAGGAAGCTTTGTTTGGATCCAAACCCAGTCCAAATAAAAATCACAGCATTAAGAGAGTACAGGGTTTGCGAGCGAATGGAAGCACAACCCCCACAAACCGTCGCCTTTCAATGGGAGGTGCCATGATTTCAGGAAATTTTGATCTTACTCCTCGGGTAAATGGGATCACTCCACGACATAATGGAATTGGCAAGGATGGCAGAAGGCGGCCTGCAGCACCATTGAATTATGTTGCAATATGTAAAGACGATACAGTCTCGCTTCCATCTGTAGCTGGGTCTGAGTTGGGTTCTCCTAGGCTGTATGACTGAAATTTGAGACAAATATGGTATGCCCCAAGAGCTGAACTGGAAGTAATCATTCAGAGAAGGATCAAAGATGGATTTTGTGGGACCGGTCTGTACTTTTAGTACACTTGTACAATGTAATTTGTACCAATATTTAGAGCTGGTAAATTCATATTAGGGCCTACGAGTTGACACGCTCCACTTTTTAAAGAGATATGTTTAATGGCCTGAACGGTCACTTACTTTCATTGAACTGGTTCATCAGATTGCCATTTGTACAGTTAAGGTCATTGCTTGTGAGACCTAAGGTTGTTTAACTTATTATAAACTTGAAACACCTGTGAATTGATGTAATTTGGAACGAAAAGACTTGAGTCAGCACCCCTTGTTGGGGGAAGGACCTAGTATGGTTGTTGGATAGTTTAACAATTCTCTTGTTTGGTTGGGGATCTGAAAGTCAGGTGTGAGCCTTTTTGCTGGGGCCTCACTCTTTAAGTTGGTTAATATTGGATTGGCTCTACTGAAAGTCTTTTCTGGTACGATAGGCATATGAGAGATACGTACATTTATAGTACTGTGATAGTATTTGGACGTATATAGTTTAACATCGGACTGACTTTATTCTATGTTGCATAGTTTTCTGAAGTTGGTGGATTCTCTCTTTATAATATGAAGAAAAGTAGTGTAGTTCTTTTTTCATGGTTATCCATGATGAAAGGTGAGGTGCAAGCTATAATGGTTTTATTTGTCTAGGATTTTCTTGA

Ace file of the UniGene sp_v3.0_unigene37408

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLE, putative n=1 Tax=Ricinus communis RepID=B9S7E4_RICCO	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Microtubule-associated protein MAP65-1a	-	-	6.11e-27	-

Source	Gene names
Sma3	AT2G01910; AT4g26760; At1g14690; At1g27920; At2g01910; At2g38720; At5g51600; At5g55230; At5g62250; B1377B10.2; F10M23.100; F13K9.3; GSVIVT00002052001; GSVIVT00002822001; GSVIVT00026353001; GSVIVT00027255001; GSVIVT00030649001; GSVIVT00038478001; LOC_Os03g

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	microtubule cytoskeleton organization	GO:0000226	Biological Process	-
Sma3	nuclear division	GO:0000280	Biological Process	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	cytokinesis by cell plate formation	GO:0000911	Biological Process	-
Sma3	microtubule bundle formation	GO:0001578	Biological Process	-
Sma3	microtubule nucleation	GO:0007020	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	positive regulation of microtubule polymerization	GO:0031116	Biological Process	-
Sma3	anaphase	GO:0051322	Biological Process	-
Sma3	formation by symbiont of syncytium involving giant cell for nutrient acquisition from host	GO:0052096	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01910.1	ATMAP65-6, MAP65-6 Microtubule associated protein (MAP65/ASE1) family protein chr2:417191-420182 FORWARD LENGTH=608	54%
RefSeq	Arabidopsis thaliana	NP_178300.3	microtubule-associated protein 6 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002298820.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg:

Fln protein: MVPSVGELSVRMDTTCSSLLRELQHIWDEIGETDVERDKMLLELEKECLEVYCRKVDQASHARARLHQSLADKEAELAFLIASIGDRNLHSQPEKRSGTLKEQLAIITPQLEELRLRKEERIKQFTEVKGQIQKISGEISGYSQRSDVVLNSINGEEDDLSLRKLDEYHAYLQALQKEKSDRLHKVLEYVNEVHRLCAVLGMDFWKTVSEVHPSLPESAPGQTKNISNKTLEGLSQTIQTLKDEKKLRIQKLQDLGTSLVELWNLMDASMEERERYRNVVCNLGALDNEVTSAGALALDIIEEAEIEVERLNLLKASKMKELVLKKRIELEEICRRAHMEPDASTAPEKSNALIDAGMVDPSELLANIESQILKAKEDVASRKEIMDRIEKWLAACEEESWLEDYNRDENRYSASKGAHINLKRAERARVTVNKIPALVENLKAKTRAWEEEKDMPFVYDGIRLLAMLEEYTFARQEREEQKKRFRDQKRLQEQFLTEQEALFGSKPSPNKNHSIKRVQGLRANGSTTPTNRRLSMGGAMISGNFDLTPRVNGITPRHNGIGKDGRRRPAAPLNYVAICKDDTVSLPSVAGSELGSPRLYD*

Protein Length: 603

Fln nts: CGCAGTTTCAAACACCGTGCATTAATGGCAGGCGAATAAAAGAATGTGGGTGGTTTGACTGGAAGCATGCAAATACATCAATCCCGTAAGGTTAAAACCCAGCGGTCACATTTTAGTGGTCTTTTTGGGTTTTATCTCATGTTTACACTGAGGGTTTAATCTTTCCAGTAAAATGTTTATCTGTCATATGACTTGACCTGAGTCCTTCTGTCACTTTATCTCGTCCCTGTGCAAAGCTTTTTCCGTAATATTTTATTTCTGCATTTTCTTGCTCTGCTTTTTCCAGTGGTGTGAGGTTCTATTCCCTCTGCTAAACTCAGTGCAGCAGTGAATCCGTGTCGAAAAATTTGAAAGCTAGCCAGCAGTGTGTCTCGC_-_ATGGTACCCTCAGTCGGTGAGCTGTCTGTCCGCATGGACACCACTTGCAGCTCGTTGCTTCGAGAACTTCAGCATATTTGGGATGAGATCGGAGAAACTGATGTCGAGAGAGACAAGATGCTTTTAGAACTGGAGAAAGAGTGTTTGGAGGTTTACTGTAGGAAGGTAGACCAGGCTAGCCATGCAAGGGCACGGCTTCATCAGTCACTTGCGGACAAAGAAGCAGAGCTTGCCTTTCTCATAGCTTCCATAGGAGACAGGAATCTTCACTCTCAGCCAGAGAAACGATCAGGAACCTTGAAAGAGCAGCTTGCAATCATCACCCCACAATTAGAAGAGTTGCGATTAAGGAAGGAGGAGCGCATTAAACAGTTTACAGAAGTGAAAGGACAAATTCAAAAAATATCTGGAGAAATTTCAGGGTATTCTCAACGAAGTGATGTTGTGCTGAACTCAATCAATGGGGAAGAAGATGACTTGTCACTTAGAAAATTAGATGAATATCATGCATATCTTCAAGCACTTCAGAAAGAGAAGAGTGACCGCCTTCACAAGGTATTGGAATATGTAAATGAGGTGCATAGACTTTGTGCGGTACTTGGTATGGACTTCTGGAAGACTGTTAGTGAAGTACATCCAAGCTTGCCTGAGTCAGCACCTGGACAGACAAAAAATATTAGCAACAAGACATTGGAGGGATTATCACAGACTATTCAGACATTGAAAGATGAAAAGAAACTTCGAATTCAAAAGTTGCAAGATCTTGGAACATCTTTGGTTGAACTTTGGAACCTAATGGATGCTTCAATGGAAGAAAGAGAACGATATAGAAATGTTGTATGCAATCTTGGAGCATTAGATAATGAAGTTACAAGTGCAGGTGCTCTTGCACTTGATATCATTGAGGAGGCAGAGATAGAAGTTGAGAGATTGAATCTGTTGAAGGCAAGCAAAATGAAAGAATTGGTGTTGAAGAAGAGGATAGAGTTGGAGGAAATATGCAGACGAGCACATATGGAACCAGACGCGAGCACAGCACCGGAGAAATCCAATGCCCTGATTGATGCTGGTATGGTGGACCCTTCTGAGCTTCTAGCTAATATTGAATCACAAATATTGAAAGCGAAGGAAGATGTTGCAAGCAGGAAAGAAATAATGGATAGAATAGAAAAGTGGCTTGCGGCTTGTGAAGAGGAAAGCTGGCTTGAAGACTACAACAGGGATGAGAATAGATACAGTGCTAGCAAGGGTGCCCACATAAATCTCAAACGTGCGGAGCGGGCTCGAGTAACTGTGAACAAAATTCCTGCTCTTGTTGAGAATTTGAAGGCTAAAACACGTGCTTGGGAAGAAGAAAAAGACATGCCATTTGTATATGATGGCATACGGCTGCTGGCAATGCTAGAGGAGTATACCTTCGCGAGACAAGAAAGAGAGGAGCAAAAGAAACGGTTCCGGGATCAGAAGCGGCTACAAGAGCAATTTCTAACAGAGCAGGAAGCTTTGTTTGGATCCAAACCCAGTCCAAATAAAAATCACAGCATTAAGAGAGTACAGGGTTTGCGAGCGAATGGAAGCACAACCCCCACAAACCGTCGCCTTTCAATGGGAGGTGCCATGATTTCAGGAAATTTTGATCTTACTCCTCGGGTAAATGGGATCACTCCACGACATAATGGAATTGGCAAGGATGGCAGAAGGCGGCCTGCAGCACCATTGAATTATGTTGCAATATGTAAAGACGATACAGTCTCGCTTCCATCTGTAGCTGGGTCTGAGTTGGGTTCTCCTAGGCTGTATGACTGA___AATTTGAGACAAATATGGTATGCCCCAAGAGCTGAACTGGAAGTAATCATTCAGAGAAGGATCAAAGATGGATTTTGTGGGACCGGTCTGTACTTTTAGTACACTTGTACAATGTAATTTGTACCAATATTTAGAGCTGGTAAATTCATATTAGGGCCTACGAGTTGACACGCTCCACTTTTTAAAGAGATATGTTTAATGGCCTGAACGGTCACTTACTTTCATTGAACTGGTTCATCAGATTGCCATTTGTACAGTTAAGGTCATTGCTTGTGAGACCTAAGGTTGTTTAACTTATTATAAACTTGAAACACCTGTGAATTGATGTAATTTGGAACGAAAAGACTTGAGTCAGCACCCCTTGTTGGGGGAAGGACCTAGTATGGTTGTTGGATAGTTTAACAATTCTCTTGTTTGGTTGGGGATCTGAAAGTCAGGTGTGAGCCTTTTTGCTGGGGCCTCACTCTTTAAGTTGGTTAATATTGGATTGGCTCTACTGAAAGTCTTTTCTGGTACGATAGGCATATGAGAGATACGTACATTTATAGTACTGTGATAGTATTTGGACGTATATAGTTTAACATCGGACTGACTTTATTCTATGTTGCATAGTTTTCTGAAGTTGGTGGATTCTCTCTTTATAATATGAAGAAAAGTAGTGTAGTTCTTTTTTCATGGTTATCCATGATGAAAGGTGAGGTGCAAGCTATAATGGTTTTATTTGTCTAGGATTTTCTTGA

Fln Alignment:

Contig37408___DTTCSSLLRELQHIWDEIGETDVERDKMXXXXXXXXXXVYCRKVDQASHARARLHQSLADKEAELAFLIASIGDRNLHSQPEKRSGTLKEQLAIITPQXXXXXXXXXXXIKQFTEVKGQIQKISGEISGYSQRSDVVLNSINGEEDDLSLRKLDEYHAYLQALQKEKSDRLHKVLEYVNEVHRLCAVLGMDFWKTVSEVHPSLPESAPGQTKNISNKTLEGLSQTIQTLKDEKKLRIQKLQDLGTSLVELWNLMDASMEERERYRNVVCNLGALDNEVTSAGXXXXXXXXXXXXXXXXXNLLKASKMKELVLKKRIELEEICRRAHMEPDASTAPEKSNALIDAGMVDPSELLANIESQILKAKEDVASRKEIMDRIEKWLAACEEESWLEDYNRDENRYSASKGAHINLKRAERARVTVNKIPALVENLKAKTRAWEEEKDMPFVYDGIRLLAMLEEYTFAXXXXXXXXXXXXXXXXLQEQFLTEQEALFGSKPSPNKNHSIKRVQGLRANGST---TPTNRRLSMGGAMISGNFDLTPRVNGITPRHNGIG--KDGRR---RPAAPLNYVAICKDDTVSLPSVAGSELGSP
D5AC28_______________DTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYRRKVDQANLSRARLHQLLADSEAELEHLISALGERSFVGRPEKQTGTLKEQLAAIAPALGDLRKKKEERVKKFMDVQVQIQSICAEIAGNLNVNDLCTTP-KVDEHDLSLKKLDEFHDQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAETVESLKEEKQRRLQKIQELGTTLIELWNLMDITMGEQKHFDHVTCYISASVDEVSMPRALASNIIDQAEVEVKRLDRLKAGKMKQLLHKKQTELEEIYRKAHMEIDTNSAQEKIMAMIDSGTINHSDLLASMDDQIAKAKEEALSRKEIMEKVDKWMAACEEESWLEDYNRDENRYSVSRGAHINLKRAERARVIVNKIPALVDSLMGKTRAWEEERGTTFFYDEVPLLAMLDEYNMMRQEREEEKLRLRDKKRLQGQLANEPEPIFVAKPTPHRQLSTKRSTGLRANGNSVDATPLNRRLSLGVQQTG--------MNGVNPARQGLSVQRDGKREHNRSMIPRNYFSLSKEDSASQPSANGSTVSSP

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
214		85	14		0.993533
215			14	71	0.984337
216			14	85	0.993533
217		14	14	71	0.984337
388	62		37		1.0
390		37		62	1.0
417		87		12	0.992554
1810	88		11		0.999952
1880		4		95	0.997494
1894	95		4		0.997494
1907	85			2	1.0
2002	92		7		0.999532
2202	90		9		0.999842
2205	5	78			1.0
2210	89			10	0.999919
2341			33	66	0.997452
2342	66		33		0.997452
2790		33		66	0.997452
2791	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain