SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37403

Length: 1430 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37403

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	5,10-methylenetetrahydrofolate dehydrogenase-5,10-methenyltetrahydrofolate cyclohydrolase n=3 Tax=Papilionoideae RepID=Q9ZTV0_PEA	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-
Sma3	Tetrahydrofolate dehydrogenase/cyclohydrolase	IPR000672	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12290.1	Amino acid dehydrogenase family protein chr3:3919591-3921326 FORWARD LENGTH=299	72%
RefSeq	Arabidopsis thaliana	NP_187837.1	amino acid dehydrogenase family protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002302571.1	tetrahydrofolate dehydrogenase/cyclohydrolase [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP24

Fln msg:

Fln protein: MAQVIDGRAIAQSILKEIAHDVSYLSNKYAKVPGLAVVIVGERKDSQTYVRMKRKACAEVGIKSIDVDLPGDAPEEKVLDAVLHLNANLQVHGISVQLPLPPHINEEKILSAISIEKDVDGFHPINIGKLAMKGREPLFVPCTPKGSIELLKRSGVSISRKRVVVVGRSNIEGLPTALLLIRLDATVTIVHSKTPDPKSIIRKADIIIASLGQANMIRGDWIKPGAAVIDVGTNAVDDLSRNSGYRLVGDVAFEEAKEVAGWITPVPGGVGPMIVAMLLRNTVDGVKRACDCKSSRFHEEASC*

Protein Length: 305

Fln nts: CTGATTTCGAACATGTGATGTGTATAGCCGGTAAATCAGCCACTGCTCACAAATACCCAAGTGATTATACTGTGTTGCTGCTTTTGATAAGAGTGGTGGAAGAGAAAGGAGAAATCA_-_ATGGCGCAAGTTATAGACGGCAGAGCCATTGCGCAGTCTATTCTCAAGGAGATCGCCCACGATGTCTCTTATCTTTCCAACAAATATGCCAAGGTTCCTGGTCTGGCTGTTGTCATTGTGGGTGAGAGGAAAGACTCCCAGACTTATGTACGTATGAAGAGGAAAGCATGTGCAGAAGTTGGCATAAAGTCTATTGATGTAGACTTACCAGGAGATGCACCAGAAGAGAAAGTCCTTGATGCAGTTCTTCATCTGAATGCCAATCTTCAAGTACATGGCATCTCAGTCCAGCTTCCACTGCCACCACACATCAATGAAGAGAAGATACTGAGTGCAATAAGCATAGAAAAGGATGTAGATGGGTTTCATCCTATTAACATTGGCAAACTTGCAATGAAGGGACGGGAACCTCTGTTTGTTCCATGTACACCCAAGGGGTCAATAGAACTCTTAAAACGGAGTGGGGTCTCCATATCAAGGAAAAGAGTAGTTGTGGTTGGTAGGAGTAACATAGAAGGATTGCCAACGGCGTTGCTGTTAATCAGGCTAGATGCAACTGTAACCATTGTGCATTCAAAAACTCCTGATCCAAAGAGTATCATAAGGAAGGCAGACATCATCATAGCTTCTTTAGGACAGGCAAATATGATCAGAGGAGATTGGATCAAACCAGGTGCTGCTGTTATTGATGTTGGTACAAATGCAGTTGATGACCTCAGCAGAAATTCAGGCTACAGATTAGTAGGTGATGTTGCTTTTGAGGAGGCCAAGGAGGTTGCTGGATGGATCACTCCAGTACCTGGTGGAGTTGGACCAATGATTGTCGCAATGCTTCTTAGAAATACAGTAGATGGTGTTAAGCGGGCCTGTGACTGTAAGTCTTCAAGGTTTCATGAAGAAGCATCATGCTGA___TATGTTCATCAGAAAGAGCAGGTCTTCACCAAATATTTTTGGTCTACAACATTTTATTGCTTTCCAAAGAAACTTCAATAAGAGAGTTTCACATAAAGAAATTATCTTAAAGACTTGTTATCATCGAAGAATGTTTCCCAACACTATAAACAACATATTTATAGTATTACGTTTCCACCAACAGTAATGGTTGCATAATATCTTCTTTTATTAACTCCATCAAGATAAGGAGGTCTTCCATGTGGGTAATCTCCCAAGCTGTGATGAGTGATAAGATTAACAAGGAATAGTGAGATCAGTGTTGTGATTTGTCAATATTATTGCTTTAACAGAGGCAGATTGAAATTAAAGTAGACAGAATATATACTTTGATTTACCCAATGGAAAGGCTTTATTTTACC

Fln Alignment:

Contig37403___MAQVIDGRAIAQSILKEIAHDVSYLSNKYAKVPGLAVVIVGERKDSQTYVRMKRKACAEVGIKSIDVDLPGDAPEEKVLDAVLHLNANLQVHGISVQLPLPPHINEEKILSAISIEKDVDGFHPINIGKLAMKGREPLFVPCTPKGSIELLKRSGVSISRKRVVVVGRSNIEGLPTALLLIRLDATVTIVHSKTPDPKSIIRKADIIIASLGQANMIRGDWIKPGAAVIDVGTNAVDDLSRNSGYRLVGDVAFEEAKEVAGWITPVPGGVGPMIVAMLLRNTVDGVKRACDCKSSRFHEEAS
B8LP24_______________MAQVIDGRAIAQSIHKEIAHDVSYLSNKCGKVPGLAVVIVGERKDSQTYVRMKRKACAEVGMKSIDVDLPGDAPEEKVLNAVLDLNANPQVHGISVQLPLPPHINEEKVLSAISIEKDVDGFHPLNIGKLAMKGREPLFVPCTPKGCIELLQRSGVSISRKRAVVVGRSNIEGLPAALLLIRLDATVTIVHSKTPDPKSIISKADIIIASLGQANMIKGDWIKPGAAVIDVGTNAVDDLTRNSGYRLVGDVAFEEVKEVAGWITPVPGGIGPMIVAMLLRNTVDGVKRACDCKSSKLHEETS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1316	21		78		1.0
1317		21	78		1.0
1319	78			21	1.0
1431	60	20		20	0.99255
1432	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain