SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37398

Length: 1181 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37398 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21 [Oryza sativa Japonica Group]	-	-	1.96182e-44	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Putative receptor-like protein kinase	-	-	1.126e-07	-

Source	Gene names
Sma3	AT1G34110; AT4G26540; B1047H05.14; B1047H05.53; CLL6; EILP; F12G12.7; GSVIVT00001242001; GSVIVT00003414001; GSVIVT00016022001; GSVIVT00017148001; GSVIVT00017153001; GSVIVT00018759001; GSVIVT00018766001; GSVIVT00018948001; GSVIVT00020456001; GSVIVT00028426

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 394 aas, your sequence is shorter than subject: 380 - 818

Fln protein: SPASVCSTFLRSSDGFVLKGRMLKKAHHISASMNAHDKRDLHALLSFRNAITSDPTGSLSNWTMENSEKICSWKGIWCRRTTRRVVAIILPRLGLAGTLPPSLGNLSLLRSLDLSYNSFTGTIPPALGRLKALGVLRFRSNLLRGFIPHEIGHLQKLIILDLRFNVLQGSIPKALGNCTRLQYIKLSVNNLTGIVPMEFGRLVNLEELHLSHNGLSGGIPASLSNCTSLQGLFIGYNNLTGPIPSVLSLIKNLAYLYFEGNSLSCYIPPDLGNCTQLRYIAFSHNNLGGRIPAELGSLQKLQYLYLQSNKLENTIPPSLGNCSSLQVLFLGDNRALSGNIPSQFGHLKELSQLSIYGPGSISGLIPSEIVTAAILYGWI*

Protein Length: 381

Fln nts: TCACCAGCATCTGTATGTTCAACGTTTCTTAGGTCTTCTGATGGTTTCGTTTTGAAAGGACGAATGCTGAAGAAAGCTCATCATATCTCTGCATCGATGAACGCTCACGATAAAAGGGACCTTCACGCTCTTTTATCTTTCCGAAATGCCATAACTTCTGATCCAACTGGATCGCTGTCTAACTGGACGATGGAGAACTCGGAGAAGATATGCTCATGGAAAGGCATCTGGTGCAGGCGAACCACGAGAAGAGTGGTGGCCATTATCCTTCCTCGATTAGGATTGGCAGGTACCCTTCCTCCATCGCTGGGTAACCTCTCTTTACTGCGCTCATTGGATCTTTCTTATAATAGTTTCACAGGAACAATTCCACCCGCCTTGGGGCGGCTCAAAGCGTTGGGAGTACTTCGCTTCCGTTCTAATCTGCTCCGGGGTTTTATTCCACACGAGATTGGCCATCTTCAAAAGCTGATCATACTTGACCTAAGGTTTAACGTGCTTCAGGGGTCAATTCCAAAAGCATTGGGTAACTGTACACGCCTGCAATATATCAAACTTTCAGTGAACAACTTGACAGGCATTGTACCAATGGAATTTGGTCGTCTTGTAAACTTGGAAGAGCTCCACTTGTCTCACAATGGTCTGAGTGGTGGTATTCCAGCTTCTCTGAGCAACTGCACTTCTCTCCAAGGATTGTTCATTGGGTACAACAATCTCACTGGTCCAATTCCTTCAGTTTTGAGTTTGATAAAAAATTTAGCTTATCTATACTTCGAAGGAAATTCACTAAGTTGTTACATCCCTCCAGATCTTGGTAATTGTACTCAGCTACGGTATATTGCTTTTTCTCACAACAACTTGGGTGGAAGAATACCGGCTGAACTGGGCTCGCTGCAAAAATTACAGTATCTGTATCTACAATCAAACAAGTTGGAGAACACCATTCCTCCGTCTCTAGGAAACTGCTCTTCTCTTCAGGTTTTATTTTTGGGAGACAATCGAGCATTATCAGGTAATATCCCATCTCAATTTGGTCATTTGAAAGAGCTTAGTCAACTATCCATTTATGGCCCAGGTAGTATTTCAGGTCTTATCCCTTCTGAAATAGTAACTGCAGCAATCTTGTATGGTTGGATTTAGAATACAATAGAATTCAAGGCTCCTTGCCTATGAGTATGTTT

Fln Alignment:

Contig37398___LKKAHHISASMNAHDKRDLHALLSFRNAITSDPTGSLSNWTMENSEKICSWKGIWCRRTTRRVVAIILPRLGLAGTXXXXXXXXXXXXXXXXXXXSFTGTIPPALGRLKALGVLRFRSNLLRGFIPHEIGHLQKLIILDLRFNVLQGSIPKALGNCTRLQYIKLSVNNLTGIVPMEFGRLVNLEELHLSHNGLSGGIPASLSNCTSLQGLFIGYNNLTGPIPSVLSLIKNLAYLYFEGNSLSCYIPPDLGNCTQLRYIAFSHNNLGGRIPAEXXXXXXXXXXXXXXXXLENTIPPSLGNCSSLQVLFLGDNRALSGNIPSQFGHLKELSQLSIYGP----GSISGLIPSEI
B8LQX6_______________LEHAEFTASSMDAHDRRDVEALLSFRKALTSDPDGSLLNWTSENSDNVCSWNGIFCRKRTKRVVAIILPGLGLQGR------------------------ISPSLCSLSLLRVLNLSGNNLTGTIPPEFGQLKSLGILDLRFNFLRGFIPKALCNCTRLQWIRLSYNSLTGSIPTEFGRLVKLEQLRLRNNNLSGSIPTSLSNCTSLQGLSIGYNSLTGPIPSVLSLIRNLSLLYFEGNSLSGHIPSSLCNCTELRYIAFSHNNLVGRIPAELGLLQNLQKLYLHTNKLESTIPPSLGNCSSLENLFLGDNR-LSGNIPSQFGSLRELFQLSIYGPEYVKGSISGSIPSEI

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
921	28		71		1.0
926		85		14	0.993533
936		42	57		1.0
941		14		85	0.993533
942			28	71	1.0
954	28		71		1.0
966		28		71	1.0
1026	66			33	1.0
1029	33			66	1.0
1032	33		66		1.0
1044	40		60		1.0
1049	60			40	1.0
1056		33	66		0.997452
1058		33	66		0.997452
1059	66	33			0.997452
1065		66		33	0.997452
1079	33		66		0.997452
1083		33		66	0.997452
1092	33	66			0.997452
1096	33		66		0.997452
1100			33	66	0.997452
1120		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain