SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37361

Length: 486 nt

UniGene Fasta

>sp_v3.0_unigene37361
GCACTTCTCCTCTGGCATCTTCCTCTGATCGCCTGAAAGAACACTGACTATACGCGCTTCCAGCGTTTTCACTCCTCTGGCTGCTCCTTTATATACGCAGCCATGTTTTCAGTTCCCTCAACCCCCGGCCTTTGGATTTCATGGGCTCACTTCACTGACTGCCGCCGTGAAATATCACCAATTTCGCTTCAGAGTTTCTGCAATATTGCCAAATATGGAGTTTTTCCCGGAGCAGGAACCTGGCCGTGCCATTGCTCTATCACACGAAGATCGCGGTTCCCGCCAATTTAAGGGAATCCGACTGCGAAAATGGGGGAGCTGGGTATCTGAAATCCGGATGCCGAGATCCAGAAAGAAGATATGGCTCGGCTCATACACTACCGCCGAGCAGGCAGCCCGCGCTTACGACGCCGCAGTGTATTGTCTCAGAGGGCGCAATGCCGAATTCAACTTTTCTGTGCCCGACATTCCGAATGTGGTTCCCCT

Ace file of the UniGene sp_v3.0_unigene37361

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dehydration-responsive element binding protein 3 n=1 Tax=Glycine max RepID=Q2VEU3_SOYBN	-	-	2.0e-20	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	RAP2-like protein	-	-	1.422e-20	-

Source	Gene names
Sma3	At1g19210; At1g21910; At1g33760; At1g46768; At1g74930; At1g77640; At2g23340; At3g50260; At4g06746; At5g11190; At5g21960; At5g67190; B1172G12.12; B1172G12.5; C-EF5; C-EF8; DBP; DREB; DREB1; DREB2; DREB29; DREB33; DREB34; DREB37; DREB38; DREB40; DREB41; DRE

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR001476	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	YbaK/aminoacyl-tRNA synthetase-associated domain	IPR007214	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19210.1	Integrase-type DNA-binding superfamily protein chr1:6626973-6627530 REVERSE LENGTH=185	1.0e-26	68%
RefSeq	Arabidopsis thaliana	NP_173355.3	ethylene-responsive transcription factor ERF017 [Arabidopsis thaliana]	2.0e-26	68%
RefSeq	Populus trichocarpa	XP_002326297.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	5.0e-27	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMR5

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 90 - 216

Fln protein: MEFFPEQEPGRAIALSHEDRGSRQFKGIRLRKWGSWVSEIRMPRSRKKIWLGSYTTAEQAARAYDAAVYCLRGRNAEFNFSVPDIPNVVP

Protein Length: 91

Fln nts: GCACTTCTCCTCTGGCATCTTCCTCTGATCGCCTGAAAGAACACTGACTATACGCGCTTCCAGCGTTTTCACTCCTCTGGCTGCTCCTTTATATACGCAGCCATGTTTTCAGTTCCCTCAACCCCCGGCCTTTGGATTTCATGGGCTCACTTCACTGACTGCCGCCGTGAAATATCACCAATTTCGCTTCAGAGTTTCTGCAATATTGCCAAAT_-_ATGGAGTTTTTCCCGGAGCAGGAACCTGGCCGTGCCATTGCTCTATCACACGAAGATCGCGGTTCCCGCCAATTTAAGGGAATCCGACTGCGAAAATGGGGGAGCTGGGTATCTGAAATCCGGATGCCGAGATCCAGAAAGAAGATATGGCTCGGCTCATACACTACCGCCGAGCAGGCAGCCCGCGCTTACGACGCCGCAGTGTATTGTCTCAGAGGGCGCAATGCCGAATTCAACTTTTCTGTGCCCGACATTCCGAATGTGGTTCCCCT

Fln Alignment:

Contig37361___MEFFPEQEPGRAIALSHEDRGSRQFKGIRLRKWGSWVSEIRMPRSRKKIWLGSYTTAEQAARAYDAAVYCLRGRNAEFNFSVPDIPN
B8LMR5_______________MENSREQEHDHAIALPHEDRGSYQFKGIRLRNWGSWVSEIRIPRTREKLWLGSYTTPEQAARAFDAALYCLRGPNAKFNFSVPDIPS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
150		66		33	0.997452
161		33	66		0.997452
179		66		33	0.997452
244	10		90		0.90298
245		90		10	0.90298
247	10		90		0.90298
304	11			88	0.923564
313	40		60		1.0
320		80	20		0.995493
338	20		80		0.995493
352	20		80		0.995493
380	20			80	0.995493
384		20	80		0.995493
395	80			20	0.995493
410		80		20	0.995493
418	20			80	0.995493
424			80	20	0.995493
428		33	66		0.997452
439	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain