SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37221

Length: 311 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene37221
GAAGCATTACTAAATCAATTAACACATTTAACTGCAAGACCATAAACTCATAATAGATGATTGTTGAACCGGAACAACATGTACTAGATTTTATCGAGGCTGGGGAAGACATTGTTAGTGTCCACTATGAACAATCTTCCACTATCCATTTGTACTGAACAGTAAATCAGGTGGGATTATTATCTAATATCTCTATTTGAGAGACAGTTTGGTGGAAGTTAATAGCTCAAGATTTATGATGTACTGGTAACTGAATACATTACTAGATACTAACTAGAACAGCTACAGTAAAAGATATTGAGATACTAACC

Ace file of the UniGene sp_v3.0_unigene37221 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribulose-phosphate 3-epimerase n=1 Tax=Ricinus communis RepID=B9RLW1_RICCO	-	-	1.0e-08	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Ribulose-phosphate 3-epimerase, chloroplastic	-	-	2.848e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribulose-phosphate 3-epimerase.	EC:5.1.3.1	-	4.39e-14	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose phosphate pathway	00030	4.39e-14	%
Sma3	Pentose and glucuronate interconversions	00040	4.39e-14	%
Sma3	Carbon fixation in photosynthetic organisms	00710	4.39e-14	%
Sma3	Metabolic pathways	01100	4.39e-14	%
Sma3	Biosynthesis of secondary metabolites	01110	4.39e-14	%

Source	Gene names
Sma3	AT5G61410; At5g61410; GSVIVT00016307001; LOC_Os03g07300; Os03g0169100; OsI_10180; OsJ_09567; PHYPADRAFT_111326; PHYPADRAFT_122169; PHYPADRAFT_207297; POPTRDRAFT_744163; RCOM_1471280; RPE; RPE2; VITISV_031724;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ribulose-phosphate 3-epimerase activity	GO:0004750	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribulose-phosphate 3-epimerase	IPR000056	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G61410.1	RPE, EMB2728 D-ribulose-5-phosphate-3-epimerase chr5:24684085-24685836 REVERSE LENGTH=281	4.0e-12	76%
RefSeq	Arabidopsis thaliana	NP_200949.1	D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]	5.0e-12	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP17

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 74 aas, your sequence is shorter than subject: 52 - 292

Fln protein: SITKSINTFNCKTINS**MIVEPEQHVLDFIEAGEDIVSVHYEQSSTIHLY*

Protein Length: 53

Fln nts: GAAGCATTACTAAATCAATTAACACATTTAACTGCAAGACCATAAACTCATAATAGATGATTGTTGAACCGGAACAACATGTACTAGATTTTATCGAGGCTGGGGAAGACATTGTTAGTGTCCACTATGAACAATCTTCCACTATCCATTTGTACTGAACAGTAAATCAGGTGGGATTATTATCTAATATCTCTATTTGAGAGACAGTTTGGTGGAAGTTAATAGCTCAAGATTTATGATGTACTGGTAACTGAATACATTACTAGATACTAACTAGAACAGCTACAGTAAAAGATATTGAGATACTAACC

Fln Alignment:

Contig37221___MIVEPEQHVLDFIEAGEDIVSVHYEQSSTIHLY*TVNQV
A9NP17_______________MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain