SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37207

Length: 2019 nt

UniGene Fasta

>sp_v3.0_unigene37207
CAATTTGGTCATCTGCCTGGTGTCAATGTTGGAGATCATTTTTTTTCACGCTGCGAAATGGTTGCTATTGGCTTGCACAGTCATTGGCTTAATGGGATAGATTTTATGGGAAATAAACACAAGAAAATGGAGGAGTATAAAAACTATACTTTTCCAATTGCTGTTGCAATAGTACTCTCAGGGGAATATGAAGATGACGTGGATAATTCGGAGGATGTAATCTATACTGGTCAAGGTGGTCAAAATTTACTTGGGGACAAACGGCAAATAAAAGACCAAAAGATGGTCCGTGGCAATTTGGCATTGAAGAATAGTATGGATCAAGCTATTCCTGTGAGAGTAATTCGTGGGCATCAATCTTCTAACAGCTATTCTGGGAAGGTCTACACGTATGATGGTTTATATAAGATTATCGATTACTGGGCTGAGAGAGGGCTATCAGGCTTTACTGTTTTCAAATTTCGTCTGAGGCGTCTGGAAGGGCAGCCTGTATTGACAACAGATCAGGTTCGTTTCAGTCGAGCTCAGCTGCCAAAAAGTCCTTCTGAGTTAAAAGGGTTGGCAGATGTGGATATCAGCAACGGCAAGGAGACATTGCCTGTTCCGGCTTCTAATGTCATTGATGAACGACCAGTTCCACCAACAGGTTACACTTATTTAAAGACTGTCAAGGTTGCTAATGGAATTGAGATTCCACCACCTGCTCAAGGTTGTAACTGCAAGGGTGAATGTGTCAATCCAAGGACGTGCTCTTGTGCGAAACTGAATGGGATGGACTTTCCATACGTTCGAAGAGATGGTGGCAGGTTGGTCGAAGCAAAGGATGTTGTTTTTGAATGTGGTCCAAATTGTGGTTGTGGGCCCACTTGTGTTAATCGTACTTCTCAACAAGGGCTTAAATACCGCCTTGAGGTGTTTCTAACTTCGAATAAAGGTTGGGCCGTGAGATCTTGGGATTCCATTCCTGCTGGGGCTCCAGTGTGTGAGTACACAGGCATTCTTATGCGGACAGATGACCTAGATAGCGTCTTGGAAAACAATTTCATCTTTGAAATTGATTGTCTACAAACAATGAAGGGAATTGATGGGAGACAGAGACGTTTAGGAGATGTATCGAAGCATGACAATGAGAAGCTTGATGATAAGAAAGGAGATGGACAGCCCGAATTTTGTATCGACGCAGGAACTGCTGGTGGTGTAGCCAGATTCATCAATCATAGTTGTGATCCAAATCTCTTCGTACAATGTGTATTGAGTTCCCACCATGATCCCAAGCTTGCGCGAGTTATGCTATTTGCAGCTGATAACATTCCGCCCCTACAGGAGCTTACATATGACTATGGATATAGTCTTGACAGCGTCGTTGATTCAGAAGGGAAAATTAAGAAAATGGCATGCTACTGTGGTGCTGTAGAATGTAGAAAACGTTTGTATTAAGGCAATTTGTAAATCGTTGTCATTAATCATCTCAAATTGAAATTATGGGATGAAGATGCATTCTTTATCAATTTTAATCGTATGTTTAAATAGCAATTCGATCTTAACCAATGATTAAAAATTGGAGGGAGTTAAGCTTTCCTATTTAAGGTTCGGAAAGAACTATTATTTTATGATAGCCATGAATCTGTTTAGGCTTGACGGATAACAAGGGGGTCAAGGGGAAGAAGTTGGGGAATATTGTGGGCTGTTTTCTAGTAGCCACTTGATATTTGGTTAAAGATTTGCAGTCTATTAGGTCTTTTATTCTAGTGTTAAAAGAAAATATTGGATCAAAGTTTGCTGTAGGGGACGGCAACTTGACTCTGCTAAGGTTTTGCGATGTGCACAGTGAGTATATTTTTCTCGGATGCAAGTCTCGTATGTTTCTTAGAACTTTGTTGCCCACGCAAGGCTTTTTTTAGGCATTGGAAACGGAATTTTTGCATGACAATTTCATGTCTAAATCCATAGATACTGTAATGAAATTAGTTTTCATTTTGTTAGATGAAATAAAATATATTATTTGGGGGCATAAAAAAA

Ace file of the UniGene sp_v3.0_unigene37207

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Arabidopsis thaliana] sp\|Q8GZB6.2\|SUVH4_ARATH RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; AltName: Full=Histone H3-K9 methyltransferase 4; Short=H3-K9-HMTase	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Sma3	Histone-lysine n-methyltransferase, suvh, putative	-	-	1.821e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	6.162e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		6.162e-23	%

Source	Gene names
Sma3	AT4G13460; At2g22740; At2g33290; At2g35160; At4g13460; At5g13960; F4P9.6; GSVIVT00006194001; GSVIVT00013493001; GSVIVT00014209001; GSVIVT00020373001; GSVIVT00023351001; GSVIVT00033960001; GSVIVT00037955001; GSVIVT00037956001; KYP; MAC12.7; OJ1051_A08.14;

Source	GOs	Term	Type	Identity
Sma3	chromosome, centromeric region	GO:0000775	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nuclear heterochromatin	GO:0005720	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	methyl-CpG binding	GO:0008327	Molecular Function	-
Sma3	double-stranded methylated DNA binding	GO:0010385	Molecular Function	-
Sma3	methyl-CpNpG binding	GO:0010428	Molecular Function	-
Sma3	methyl-CpNpN binding	GO:0010429	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	histone methyltransferase activity (H3-K9 specific)	GO:0046974	Molecular Function	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	maintenance of DNA methylation	GO:0010216	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	histone methylation	GO:0016571	Biological Process	-
Sma3	peptidyl-lysine methylation	GO:0018022	Biological Process	-
Sma3	chromatin silencing by small RNA	GO:0031048	Biological Process	-
Sma3	regulation of gene expression, epigenetic	GO:0040029	Biological Process	-
Sma3	histone H3-K9 methylation	GO:0051567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Pre-SET zinc-binding sub-group	IPR003606	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Pre-SET domain	IPR007728	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13960.1	SUVH4, KYP, SDG33 SU(VAR)3-9 homolog 4 chr5:4501688-4505979 FORWARD LENGTH=624	60%
RefSeq	Arabidopsis thaliana	NP_196900.1	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002301759.1	SET domain protein, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQP3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 88 aas, putative chimeric sequence, your sequence is shorter than subject: 479 - 830

Fln protein: QFGHLPGVNVGDHFFSRCEMVAIGLHSHWLNGIDFMGNKHKKMEEYKNYTFPIAVAIVLSGEYEDDVDNSEDVIYTGQGGQNLLGDKRQIKDQKMVRGNLALKNSMDQAIPVRVIRGHQSSNSYSGKVYTYDGLYKIIDYWAERGLSGFTVFKFRLRRLEGQPVLTTDQVRFSRAQLPKSPSELKGLADVDISNGKETLPVPASNVIDERPVPPTGYTYLKTVKVANGIEIPPPAQGCNCKGECVNPRTCSCAKLNGMDFPYVRRDGGRLVEAKDVVFECGPNCGCGPTCVNRTSQQGLKYRLEVFLTSNKGWAVRSWDSIPAGAPVCEYTGILMRTDDLDSVLENNFIFEIDCLQTMKGIDGRQRRLGDVSKHDNEKLDDKKGDGQPEFCIDAGTAGGVARFINHSCDPNLFVQCVLSSHHDPKLARVMLFAADNIPPLQELTYDYGYSLDSVVDSEGKIKKMACYCGAVECRKRLY*

Protein Length: 480

Fln nts: CAATTTGGTCATCTGCCTGGTGTCAATGTTGGAGATCATTTTTTTTCACGCTGCGAAATGGTTGCTATTGGCTTGCACAGTCATTGGCTTAATGGGATAGATTTTATGGGAAATAAACACAAGAAAATGGAGGAGTATAAAAACTATACTTTTCCAATTGCTGTTGCAATAGTACTCTCAGGGGAATATGAAGATGACGTGGATAATTCGGAGGATGTAATCTATACTGGTCAAGGTGGTCAAAATTTACTTGGGGACAAACGGCAAATAAAAGACCAAAAGATGGTCCGTGGCAATTTGGCATTGAAGAATAGTATGGATCAAGCTATTCCTGTGAGAGTAATTCGTGGGCATCAATCTTCTAACAGCTATTCTGGGAAGGTCTACACGTATGATGGTTTATATAAGATTATCGATTACTGGGCTGAGAGAGGGCTATCAGGCTTTACTGTTTTCAAATTTCGTCTGAGGCGTCTGGAAGGGCAGCCTGTATTGACAACAGATCAGGTTCGTTTCAGTCGAGCTCAGCTGCCAAAAAGTCCTTCTGAGTTAAAAGGGTTGGCAGATGTGGATATCAGCAACGGCAAGGAGACATTGCCTGTTCCGGCTTCTAATGTCATTGATGAACGACCAGTTCCACCAACAGGTTACACTTATTTAAAGACTGTCAAGGTTGCTAATGGAATTGAGATTCCACCACCTGCTCAAGGTTGTAACTGCAAGGGTGAATGTGTCAATCCAAGGACGTGCTCTTGTGCGAAACTGAATGGGATGGACTTTCCATACGTTCGAAGAGATGGTGGCAGGTTGGTCGAAGCAAAGGATGTTGTTTTTGAATGTGGTCCAAATTGTGGTTGTGGGCCCACTTGTGTTAATCGTACTTCTCAACAAGGGCTTAAATACCGCCTTGAGGTGTTTCTAACTTCGAATAAAGGTTGGGCCGTGAGATCTTGGGATTCCATTCCTGCTGGGGCTCCAGTGTGTGAGTACACAGGCATTCTTATGCGGACAGATGACCTAGATAGCGTCTTGGAAAACAATTTCATCTTTGAAATTGATTGTCTACAAACAATGAAGGGAATTGATGGGAGACAGAGACGTTTAGGAGATGTATCGAAGCATGACAATGAGAAGCTTGATGATAAGAAAGGAGATGGACAGCCCGAATTTTGTATCGACGCAGGAACTGCTGGTGGTGTAGCCAGATTCATCAATCATAGTTGTGATCCAAATCTCTTCGTACAATGTGTATTGAGTTCCCACCATGATCCCAAGCTTGCGCGAGTTATGCTATTTGCAGCTGATAACATTCCGCCCCTACAGGAGCTTACATATGACTATGGATATAGTCTTGACAGCGTCGTTGATTCAGAAGGGAAAATTAAGAAAATGGCATGCTACTGTGGTGCTGTAGAATGTAGAAAACGTTTGTATTAA___GGCAATTTGTAAATCGTTGTCATTAATCATCTCAAATTGAAATTATGGGATGAAGATGCATTCTTTATCAATTTTAATCGTATGTTTAAATAGCAATTCGATCTTAACCAATGATTAAAAATTGGAGGGAGTTAAGCTTTCCTATTTAAGGTTCGGAAAGAACTATTATTTTATGATAGCCATGAATCTGTTTAGGCTTGACGGATAACAAGGGGGTCAAGGGGAAGAAGTTGGGGAATATTGTGGGCTGTTTTCTAGTAGCCACTTGATATTTGGTTAAAGATTTGCAGTCTATTAGGTCTTTTATTCTAGTGTTAAAAGAAAATATTGGATCAAAGTTTGCTGTAGGGGACGGCAACTTGACTCTGCTAAGGTTTTGCGATGTGCACAGTGAGTATATTTTTCTCGGATGCAAGTCTCGTATGTTTCTTAGAACTTTGTTGCCCACGCAAGGCTTTTTTTAGGCATTGGAAACGGAATTTTTGCATGACAATTTCATGTCTAAATCCATAGATACTGTAATGAAATTAGTTTTCATTTTGTTAGATGAAATAAAATATATTATTTGGGGGCATAAAAAAA

Fln Alignment:

Contig37207___GVNVGDHFFSRCEMVAIGLHSHWLNGIDFMGNKHKKMEEYKNYTFPIAVAIVLSGEYEDDVDNSEDVIYTGQGGQNLLGDKRQIK----DQKMVRGNLALKNSMDQAIPVRVIRGH---QSSNSYSGKVYTYDGLYKIIDYWAERGLSGFTVFKFRLRRLEGQPV-LTTDQVRFSRAQLPKSPSELKGLADV
B8LQP3_______________GVLVGECWGDRMECRQWGAHLPHVAGISGQSDYG-------------AQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFDKSNEALRVSCKMGYPLRVVRSHKEKRSSYAPEGGV-RYDGIYRIEKCWRKKGIQGFKVCRYLFVRCDNEPAPWTSDECGDRPRPLPKI-DELKDATDI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
93		33		66	0.997452
189	25			75	0.996473
190		25	75		0.996473
192	75			25	0.996473
193			75	25	0.996473
1434	14		85		0.993533
1597	80	20			0.995493
1599	80	20			0.995493
1600			75	25	0.996473
1601	75	25			0.996473
2009	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain