SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37150

Length: 1304 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37150 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S7Q2_RICCO	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Anther-specific proline-rich protein APG	-	-	1.001e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	2.925e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	2.925e-09	%
Sma3	Bisphenol degradation	00363	2.925e-09	%
Sma3	Glycerophospholipid metabolism	00564	2.925e-09	%
Sma3	Toluene degradation	00623	2.925e-09	%
Sma3	Aminobenzoate degradation	00627	2.925e-09	%
Sma3	Retinol metabolism	00830	2.925e-09	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	2.925e-09	%

Source	Gene names
Sma3	AEL; At3g04290; At4g28780; At5g18430; At5g33370; F16A16.110; F19N2.90; F20L16.150; GSVIVT00026719001; GSVIVT00026720001; GSVIVT00026725001; GSVIVT00028445001; LOC_Os10g32580; LTL1; Lip; OJ1014_H03.11; OSIGBa0101P20.1; OSIGBa0157A06.8; OSJNBa0043L24.11; OS

Source	GOs	Term	Type	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to lithium ion	GO:0010226	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-
Sma3	Lipase, GDSL, active site	IPR008265	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04290.1	ATLTL1, LTL1 Li-tolerant lipase 1 chr3:1133620-1136223 REVERSE LENGTH=366	51%
RefSeq	Arabidopsis thaliana	NP_187079.1	GDSL esterase/lipase LTL1 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002319124.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPL3

Fln msg: Separated hits, possible frame ERROR between 311 and 314,

Fln protein: MELNTASFLAIMLVSVVVTTAAAAPPAQFIFGDSLFDSGNNNYLASLARADRYPYGIDYPTGRPTGRFSNGLNLADFICLKLGSDLVLAVxxDPSLKGNELLKGANFASAGIGILNDTGTQFAEIIRMADQFELFQEYKDRVASIIGRNATSKLVAEGHFSISLGGNDYVNNYYVLPVTVRSLEFSLHDYTDFIISEFEKILAKFYELGARRVLVMSLGPLGCAPMERASRST*GECALVLQEATQLFNDRLTPAIDRLNTRFSAPIYTISEMFTIFMDLYTNPQVFGIGEGKDACCGQGRYNGIGLCNSQSNLCPDRGNNVWWDQFHPTERAAKIIVDQTFSNSSVSPISLKSRMKLDVYL*

Protein Length: 364

Fln nts: ATCACTCAAATTGGATCGATCTTTTTCGTCAACAGAGA_-_ATGGAGTTGAATACTGCCTCATTTCTTGCCATAATGCTCGTTTCTGTCGTTGTAACAACGGCAGCTGCAGCGCCTCCAGCACAGTTCATTTTCGGAGACTCGTTGTTCGATAGCGGCAACAACAATTATCTTGCTTCGCTCGCTAGAGCAGACCGTTATCCTTATGGGATTGATTATCCCACCGGGAGACCAACTGGACGTTTTTCCAATGGATTAAATCTCGCCGATTTTATCTGCCTGAAACTTGGATCCGACCTGGTGCTTGCCGTACTxxxGGATCCTTCGCTCAAGGGCAATGAATTACTGAAAGGTGCCAACTTCGCCTCTGCAGGCATTGGCATTCTAAATGATACGGGGACTCAATTTGCTGAAATTATAAGGATGGCCGACCAATTCGAGCTTTTCCAAGAGTATAAAGACAGAGTCGCAAGTATTATAGGACGTAATGCGACCAGTAAACTGGTTGCAGAGGGGCACTTTTCCATATCTCTTGGAGGAAATGATTACGTCAATAACTACTACGTTCTGCCTGTAACAGTGAGATCACTGGAGTTCTCTCTACATGACTATACTGATTTTATCATCTCCGAGTTTGAAAAGATTTTGGCGAAATTTTACGAGCTGGGAGCACGCAGGGTTCTGGTTATGTCGCTGGGTCCTTTGGGGTGTGCTCCTATGGAGAGGGCATCGAGGTCCACATAGGGTGAATGCGCGCTGGTGCTACAGGAAGCCACGCAACTTTTTAATGATCGACTAACACCCGCAATCGATCGACTCAACACACGATTTTCTGCTCCGATATATACAATATCGGAAATGTTTACGATTTTCATGGACTTATACACAAATCCTCAAGTATTTGGGATTGGGGAGGGCAAGGATGCGTGCTGCGGACAAGGACGTTATAACGGTATTGGTCTGTGCAACTCCCAGTCCAATTTGTGCCCAGATAGGGGAAACAATGTGTGGTGGGACCAGTTTCATCCAACTGAGCGCGCTGCTAAAATCATAGTTGACCAAACCTTTTCCAATTCATCTGTGAGTCCTATCAGCTTAAAAAGTCGGATGAAACTCGATGTCTATCTGTGA___GGAAGAAATCACATCTCATGGGCTCTATTTTCAGAAGCATTAATAAAGAAAAATATAATGGTCCTGCCATCATATTTGTGTCCGATCTTCTTCGTTGTCAAACCGTCAAGCGTTCTGCAATAAAATTGTATTAGATTTCTCTTTTCTGTAACCTGGAGCAGCAAGCAATGTCTGATCG

Fln Alignment:

Contig37150___MELNTASFLAIMLVSXXXXXXXXXXXAQFIFGDSLFDSGNNNYLASLARADRYPYGIDYPTGRPTGRFSNGLNLADFICLKLGSDLVLAVLxDPSLKGNELLKGANFASAGIGILNDTGTQFAEIIRMADQFELFQEYKDRVASIIGRNATSKLVAEGHFSISLGGNDYVNNYYVLPVTVRSLEFSLHDYTDFIISEFEKILAKFYELGARRVLVMSLGPLGCAPMERASRST*GECALVLQEATQLFNDRLTPAIDRLNTRFSAPIYTISEMFTIFMDLYTNPQVFGIGEGKDACCGQGRYNGIGLCNSQSNLCPDRGNNVWWDQFHPTERAAKIIVDQTFSNSS--VSPISLKSRMKLDV
B8LPL3_______________MDFYTVSLVAV-LVSVCVTTADAAPPAQLVFGDSLVDTGNNNYLVAIARADRSPYGIDFPSRLPTGRFCNGLNIADFIGLKFGSQPVLPYLxDPSLQGQELLRGANFASAGIGILNDTGLQFGQIIRMDEQFEFFQKYQDRVASIIGRNATNKLVAEGLVSIALGGNDYVNNYFLLPVTLRSLQFSLPAYTNFIISEFEKILARFYELGARRVLVLSSGPLGCIPMERATSSLNGDCAQRPQQAAKLFNKGLNIIVNRLNRRFSAQIYTITKMFPAMMDLYTNPQLYGIGDAKDACCGQGPYNGLGLCTSLSLLCPDRGNNVWWDQFHPTERAARIIVDKFFSGSPSYVGPVSIQDLMKLDV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
846	25		75		0.996473
954	16		83		0.994512
955	16			83	0.994512
958			83	16	0.994512
975	66		33		1.0
1049		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain