SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37120

Length: 1910 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37120

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb\|ABS32306.1\| dicer-like protein [Oryza sativa Japonica Group]	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Ribonuclease III domain	IPR000999	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20320.1	DCL4, ATDCL4 dicer-like 4 chr5:6859571-6869068 REVERSE LENGTH=1702	48%
RefSeq	Arabidopsis thaliana	NP_001190348.1	dicer-like protein 4 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002308384.1	dicer-like protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN71

Fln msg: Overlapping hits, possible frame ERROR between 121 and 111, your sequence is shorter than subject: 559 - 685

Fln protein: LPDVEKTIHYFEGDNAMAEMDSLSVKCTKRHHLLHMxxxxxDVVEALIGAYLVDSGFPAALAFLKWMGIEIDFDASLVGEACLQSKNNLSLIKCIDIDELERLLGYNFIHKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVYPDMKPGYLTDMRSMTVNNESFASVAVRHGLYMYLIQKSDSLSSAVKKYVDFMKSLLTRDRDSYDEPEPKCPKVLGDIVESFAGALVVDTGFDLECVWKLVLRILEPIVTPETLCIQPVRELSEVCQHHNLTLDYRKVPKGNGFLVEANVSGKKVSGFVGGTGTRTSIKDAKKVASKDALLKLKGLD*NIHINLEVYQNMSERLCSTCR*EKAEKATSNIIITERLEEHKFFPSRASCSRDLHGVRSTSEFIPPGTASPQKNASTICEQPQLLSTSLTENDMSSTNQNQEVDQECINSDHHYDVANTTEYQWPSESWDTDIDQFLGSAKSSLNEFCQKRSWEVPEWVCYKEEGMPHQKSFTYMAVLKLPENICIECLGEPKKNKRLAMESASRGALWWLNSQGYL*

Protein Length: 560

Fln nts: ACTTCCAGATGTGGAGAAGACAATTCACTATTTTGAAGGAGATAATGCAATGGCAGAAATGGATTCTTTGAGTGTAAAGTGCACGAAACGGCATCACTTGTTACATATGxxxxxxxxxxxxxxxGATGTAGTGGAGGCTTTGATTGGAGCATACTTAGTAGACAGTGGCTTTCCAGCAGCTTTGGCATTTCTAAAGTGGATGGGAATAGAAATTGATTTTGATGCTTCTCTCGTAGGAGAAGCTTGCTTACAAAGTAAGAATAATTTATCGCTCATTAAATGCATTGACATTGATGAGTTGGAAAGGTTGCTAGGATACAATTTTATTCATAAAGGTCTGCTCTTGGAGGCATTCGCACATCCTTCATTTAATGAACATAATGGAGGGTGTTATCAGCGTCTTGAATTCCTTGGAGATGCTGTGCTGGATTACATTATAACTTCTTACTTGTATTCGGTCTATCCAGACATGAAGCCGGGCTATTTGACAGACATGAGATCAATGACTGTCAACAACGAGTCTTTCGCTTCTGTGGCAGTTCGCCATGGTCTATATATGTATCTTATTCAGAAGTCAGATAGTCTTTCTTCTGCAGTTAAAAAGTATGTGGATTTCATGAAGTCTTTACTTACCAGAGACAGAGATTCATATGATGAGCCTGAACCAAAATGTCCTAAGGTGCTTGGGGATATAGTGGAGTCATTTGCTGGAGCTTTGGTGGTGGATACAGGCTTTGATTTAGAATGTGTTTGGAAATTAGTGCTCAGAATCTTGGAACCAATAGTCACCCCTGAAACCCTATGCATTCAACCTGTAAGGGAACTTAGTGAGGTTTGCCAACACCATAATTTGACGTTGGACTACAGAAAAGTGCCAAAGGGAAATGGATTTTTAGTTGAAGCAAATGTAAGTGGAAAAAAGGTAAGCGGATTTGTGGGTGGTACTGGCACAAGGACAAGTATAAAAGATGCTAAGAAAGTTGCTTCAAAGGATGCATTACTAAAGCTGAAGGGTTTGGATTAGAACATCCACATAAATTTAGAAGTTTATCAGAACATGTCGGAAAGGCTCTGCAGTACTTGTCGGTAAGAAAAAGCAGAAAAAGCAACATCAAACATTATAATCACAGAGAGACTGGAAGAACATAAATTTTTTCCTTCTCGAGCTTCTTGTTCCCGTGATTTGCATGGTGTTAGAAGCACTTCAGAGTTTATTCCACCTGGCACGGCATCACCACAGAAGAATGCATCGACAATCTGTGAGCAGCCTCAGCTGCTTTCAACTTCCTTGACAGAAAATGACATGTCCTCAACTAATCAGAACCAGGAGGTTGATCAAGAATGTATAAACAGTGATCACCATTATGACGTAGCTAATACGACTGAGTATCAGTGGCCATCTGAAAGCTGGGACACAGATATAGACCAGTTTCTGGGATCTGCAAAATCAAGCCTCAATGAGTTTTGTCAAAAGCGAAGCTGGGAAGTGCCTGAGTGGGTTTGCTACAAAGAGGAAGGCATGCCACACCAAAAAAGCTTTACATATATGGCTGTGTTAAAACTGCCTGAAAACATTTGTATTGAGTGCTTGGGAGAACCCAAGAAGAACAAGAGGTTGGCAATGGAATCCGCTTCACGTGGTGCACTATGGTGGCTTAATTCTCAAGGTTACTTGTAGCATATGACACCAAAATTTTACCATTTATATGTGCATGGATTATTGCTCCTGCCTACCAGCATCAGAAACAGCAGACTGGAGGCATTCATTATTCTTTATTTGATGACTAGATGATATTTTCCATAATGATACAAAATAGCTCCTGCTTTCTTTAAACATGAGCTATATGCGCAATAGGTTAGTTTATGACTTTCCTATGATATGTTTGTTCCTAGATATTAGAAGGAATGAAAA

Fln Alignment:

Contig37120___PDVEKTIHYFEGDNAMAEMDSLSVKCTKRHHLLHMxxxxDVVEALIGAYLVDSGFPAALAFLKWMGIEIDFDASLVGEACLQSKNNLSLIKCIDIDELERLLGYNFIHKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVYPDMKPGYLTDMRSMTVNNESFASVAVRHGLYMYLIQKSDSLSSAVKKYVDFMKSLLTRDRDSYDEPEPKCPKVLGDIVESFAGALVVDTGFDLECVWKLVLRILEPIVTPETLCIQPVRELSEVCQHHNLTLDYRKVPK--GNGFLVEANVXXXXXXXXXXXXXXRTSIKDAKKVASXXXXXXXXXXXXNIHINLEVYQNMSERLCSTCR--------*EKAEKATSNIIITERLEEHKFFPSRASCSRDLHGVRSTSEFIPPGTASPQKNASTICEQPQLLSTSLTENDMSSTNQNQEVDQECINSDHHYDVANTTEYQWPSESWDTDIDQFLGSAKSSLNEFCQKRSWEVPEWVCYKEEGMPHQKSFTYMAVLKLPENICIECLGEPKKNKRLAMESASRGALWWLNSQGYL
B8LN71_______________PELVHMIHYFEGDNTMTDTDFTSVKCTKRHHWLHMxxxxDVVEALIGAYLVDSGFGAALAFLKWIGIEIDFDTSLVGEVCIRSRNNLSLIKCIDIDELERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVYPDMKPGYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYVDFMKALFTADRDSCDEPEPKCPKVLGDIVESFAGALVIDTGFDLDCVWKLMLNILQPIVTPETLCLQPVRELSEVCQHHNLTLDYVKASKGNGNGYLVEAKVSGKKVSGSVGGTGTRTSIKDAKKVASKDALLKLKG------FGLEHPNKILEVFIRTCRKGSAVLVGKNKAEQATSNIKIAGKLEEPKFNSSPASCSRDLHSVRSTSELIPPCMASLQKNSSTVCEQP--LLPLATENDMSSTNQNQEAYKEYTNSDHHYDITNKTEYQWPSASWDTDIDQFLGSAKSSLNEFCQKKSWEVPSWVCYQEEGMPHQKSFTYMAVLRLPGNISIECLGEPMKNKRLAMESASRGALWWLNSQGYL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1228	25		75		0.996473
1308	16	83			0.994512
1311		83		16	0.994512
1370	25		75		0.996473
1372	75			25	0.996473
1675	20		80		0.995493
1676		20		80	0.995493
1678			80	20	0.995493
1679		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain