SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37026

Length: 2191 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene37026
ATGGGGATGTCTATTTTGTTCTCTCAAATCAGTCACGGCCCATATATACTTTCTGGAGTTTGAAGCTGAAGTCGAAATAGTGCAGTATAAAAGTATTCCATTTGGTCCCTGTTCTGGTATTGGACATACCTAGTGGCGAAGTGAATCAAACTGTAATGGAAGTGTTTAATCAACATGTCCCTGCACGCTTATTTGAGGCCAGGTTCGTTTTGATGGCCGTATGGCTGACGTTGTTGACTGCTATGGCCTCCGCGAAGCTACTCACTGAGACATTCGTTCTTCAATCGACATCTGTAAAAAGACTATGCGGGACGCACAACATAATCACCGTCAACGGCCAGTTTCCAGGTCCAACTCTCCATGTCAGGAACGGAGACACTCTTGTAGTCAAAGTGTACAACAACGCCCAATATAACGCTACAATCCACTGGCACGGAGTGCGTCAATTCCGCACTGGGTGGTCCGATGGACCTGAATATATAACCCAATGCCCCATTCGCCCAGGAGGAAGTTACACATATAGATTCACCATCACTGGTCAAGAAGGGACTCTATGGTGGCATGCCCACAGTTCATGGCTTCGAGCTACTGTCTATGGAGCCTTGATCATCTCTCCAAGCCCGGGAGCCACTTATCCCTTTACCAGGCCCCATGGCGAGGTTCCCATTCTTCTAGGAGAATGGTGGAATAGGAATCCTATGGATGTTGTGAAGCAGGCAACCCAAACAGGAGCTGCCCCCAACGTTTCAGATGCGTTTACTATCAATGGACAGCCAGGAGACCTATACCAATGTTCGAGTTCAGATACCATTCGCGTCTCGGTGAAGAGTGGGGAAAGCACGCTTCTACGGGTGATCAATGCTGCACTCAATACCGACTTATTCTTCACGGTAGGTAGCCACACAATGACAGTCGTGGATGGGAATGGCTTTGTATACGAAGCCTTTTCAGACGAATTTTCTGATGCTCGGCCCGGGGCAGACAACAGACGTACTTGTCACTGCTGATCAATCTACAGGTAGATATTACATGGCTGCTCGAGCATATTCCAGTGGCCAAGGAGTTCCCTTCGATAACACCACTACCGTTGCCATTTTAGAATACAAGGGAAGTTCTAGCAGTACATCAGTTCCAACCGTGCCTAATCTTCCAGCTTATAACGACACCCAGACTGCAACTAAGTTCGCTAATGCTCTGAGAAGCTTAGCCTCACACGACCACCCGGTCTTTGTTCCACAGAATGTGGACCAGAATCTGTTCTACACCATTGGTCTAGGATTGATCAACTGTCCAGGACAGTCTTGTGGAGGTCCCAATGGATCAAGATTTGCAGCGAGTATGAATAACGCATCGTTTGTTCTCCCAACGACTTCTTCAATCCTTGAAGCTCAACATTTTGGCATGAAAGGAGTATTCTCTGGAGACTTTCCCGACAACCCTCTTGTGCAATTTGATTATACTGCACAGAGCGTAAGCAGAAGTCTGTGGTCCCCGGTGAAAGGCACAAGAGTAAAAGTTCTAAACTATAACACGACGGTGCAAGTAATTCTGCAGGGAACAAATATCTTTGCCGGTGAAAGCCATCCTATCCATCTCCATGGCTATGACTTTTACGTTGTGGGATCAGGGTTTGGTAATTATAATGCAAAAACTGATCCTCAGATGTTCAACCTGGTCGATCCTCCTATGCGCAACACTGTGAACGTTCCGGTCAACGGTTGGGCTGCCATAAGACTTGTAGCCGACAATCCTGGAGCTTGGGTGATGCATTGCCACTTGGACGTGCACATAACATGGGGTTTGGCCATGGTTTTTGTGGTGAGCAATGGACCTAGCTCTCTTTTGAGTATCGAGTCGCCCCCATTAGATCTTCCGCAATGCTAAGGACAAATACCATAGATACCTATGACAGATGGACTATATAAACAGAGAGTACTTTCTTATGAAATAATATGGTCGTATAATTCCTCTCCTTAGATTGATCAGGTTCAATCATATTGTTCGGTTAAAGTGAATCTATCCGTGGAATGTTTTCCTCTAGATCCTTTTTCTCCATTTTCGCTTGTTCTGCAACCACACTCAATAGATATTTTGATTTTCCATCCTTTGTAAAGTCAATTTTGATCCCCTTGGTCGAGTGTTCCCCGCAAAGAGTTTCTTCTTAATTGAAAATCTTATCTGTAAACAGTTA

Ace file of the UniGene sp_v3.0_unigene37026 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase 110a n=1 Tax=Populus trichocarpa RepID=B9HC76_POPTR	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Sma3	Laccase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	2.317e-32	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		2.317e-32	%
Sma3	Metabolic pathways	01100		2.317e-32	%

Source	Gene names
Sma3	At1g18140; At2g29130; At2g30210; At2g38080; At2g40370; At3g09220; At5g01040; At5g01050; At5g01190; At5g03260; At5g05390; At5g07130; At5g09360; At5g58910; At5g60020; B1026C12.14; B1045D11.30; B1088C09.5; F15A17_290; F16M14.1; F3L24.9; F7J8.170; F7J8.20; F7

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09220.1	LAC7 laccase 7 chr3:2827434-2830477 REVERSE LENGTH=567	48%
RefSeq	Arabidopsis thaliana	NP_187533.1	laccase 7 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002308196.1	laccase 110a [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPE8

Fln msg: Separated hits, possible frame ERROR between 917 and 934,

Fln protein: MEVFNQHVPARLFEARFVLMAVWLTLLTAMASAKLLTETFVLQSTSVKRLCGTHNIITVNGQFPGPTLHVRNGDTLVVKVYNNAQYNATIHWHGVRQFRTGWSDGPEYITQCPIRPGGSYTYRFTITGQEGTLWWHAHSSWLRATVYGALIISPSPGATYPFTRPHGEVPILLGEWWNRNPMDVVKQATQTGAAPNVSDAFTINGQPGDLYQCSSSDTIRVSVKSGESTLLRVINAALNTDLFFTVGSHTMTVxxxxxxxYTKPFQTNFLMLGPGQTTDVLVTADQSTGRYYMAARAYSSGQGVPFDNTTTVAILEYKGSSSSTSVPTVPNLPAYNDTQTATKFANALRSLASHDHPVFVPQNVDQNLFYTIGLGLINCPGQSCGGPNGSRFAASMNNASFVLPTTSSILEAQHFGMKGVFSGDFPDNPLVQFDYTAQSVSRSLWSPVKGTRVKVLNYNTTVQVILQGTNIFAGESHPIHLHGYDFYVVGSGFGNYNAKTDPQMFNLVDPPMRNTVNVPVNGWAAIRLVADNPGAWVMHCHLDVHITWGLAMVFVVSNGPSSLLSIESPPLDLPQC*

Protein Length: 578

Fln nts: ATGGGGATGTCTATTTTGTTCTCTCAAATCAGTCACGGCCCATATATACTTTCTGGAGTTTGAAGCTGAAGTCGAAATAGTGCAGTATAAAAGTATTCCATTTGGTCCCTGTTCTGGTATTGGACATACCTAGTGGCGAAGTGAATCAAACTGTA_-_ATGGAAGTGTTTAATCAACATGTCCCTGCACGCTTATTTGAGGCCAGGTTCGTTTTGATGGCCGTATGGCTGACGTTGTTGACTGCTATGGCCTCCGCGAAGCTACTCACTGAGACATTCGTTCTTCAATCGACATCTGTAAAAAGACTATGCGGGACGCACAACATAATCACCGTCAACGGCCAGTTTCCAGGTCCAACTCTCCATGTCAGGAACGGAGACACTCTTGTAGTCAAAGTGTACAACAACGCCCAATATAACGCTACAATCCACTGGCACGGAGTGCGTCAATTCCGCACTGGGTGGTCCGATGGACCTGAATATATAACCCAATGCCCCATTCGCCCAGGAGGAAGTTACACATATAGATTCACCATCACTGGTCAAGAAGGGACTCTATGGTGGCATGCCCACAGTTCATGGCTTCGAGCTACTGTCTATGGAGCCTTGATCATCTCTCCAAGCCCGGGAGCCACTTATCCCTTTACCAGGCCCCATGGCGAGGTTCCCATTCTTCTAGGAGAATGGTGGAATAGGAATCCTATGGATGTTGTGAAGCAGGCAACCCAAACAGGAGCTGCCCCCAACGTTTCAGATGCGTTTACTATCAATGGACAGCCAGGAGACCTATACCAATGTTCGAGTTCAGATACCATTCGCGTCTCGGTGAAGAGTGGGGAAAGCACGCTTCTACGGGTGATCAATGCTGCACTCAATACCGACTTATTCTTCACGGTAGGTAGCCACACAATGACAGTCGTxxxxxxxxxxxxxxxxxxGTATACGAAGCCTTTTCAGACGAATTTTCTGATGCTCGGCCCGGGGCAGACAACAGACGTACTTGTCACTGCTGATCAATCTACAGGTAGATATTACATGGCTGCTCGAGCATATTCCAGTGGCCAAGGAGTTCCCTTCGATAACACCACTACCGTTGCCATTTTAGAATACAAGGGAAGTTCTAGCAGTACATCAGTTCCAACCGTGCCTAATCTTCCAGCTTATAACGACACCCAGACTGCAACTAAGTTCGCTAATGCTCTGAGAAGCTTAGCCTCACACGACCACCCGGTCTTTGTTCCACAGAATGTGGACCAGAATCTGTTCTACACCATTGGTCTAGGATTGATCAACTGTCCAGGACAGTCTTGTGGAGGTCCCAATGGATCAAGATTTGCAGCGAGTATGAATAACGCATCGTTTGTTCTCCCAACGACTTCTTCAATCCTTGAAGCTCAACATTTTGGCATGAAAGGAGTATTCTCTGGAGACTTTCCCGACAACCCTCTTGTGCAATTTGATTATACTGCACAGAGCGTAAGCAGAAGTCTGTGGTCCCCGGTGAAAGGCACAAGAGTAAAAGTTCTAAACTATAACACGACGGTGCAAGTAATTCTGCAGGGAACAAATATCTTTGCCGGTGAAAGCCATCCTATCCATCTCCATGGCTATGACTTTTACGTTGTGGGATCAGGGTTTGGTAATTATAATGCAAAAACTGATCCTCAGATGTTCAACCTGGTCGATCCTCCTATGCGCAACACTGTGAACGTTCCGGTCAACGGTTGGGCTGCCATAAGACTTGTAGCCGACAATCCTGGAGCTTGGGTGATGCATTGCCACTTGGACGTGCACATAACATGGGGTTTGGCCATGGTTTTTGTGGTGAGCAATGGACCTAGCTCTCTTTTGAGTATCGAGTCGCCCCCATTAGATCTTCCGCAATGCTAA___GGACAAATACCATAGATACCTATGACAGATGGACTATATAAACAGAGAGTACTTTCTTATGAAATAATATGGTCGTATAATTCCTCTCCTTAGATTGATCAGGTTCAATCATATTGTTCGGTTAAAGTGAATCTATCCGTGGAATGTTTTCCTCTAGATCCTTTTTCTCCATTTTCGCTTGTTCTGCAACCACACTCAATAGATATTTTGATTTTCCATCCTTTGTAAAGTCAATTTTGATCCCCTTGGTCGAGTGTTCCCCGCAAAGAGTTTCTTCTTAATTGAAAATCTTATCTGTAAACAGTTA

Fln Alignment:

Contig37026___HVPARLFEARFVLMAVWLTLLTAMASAKLLTETFVLQSTSVKRLCGTHNIITVNGQFPGPTLHVRNGDTLVVKVYNNAQYNATIHWHGVRQFRTGWSDGPEYITQCPIRPGGSYTYRFTITGQEGTLWWHAHSSWLRATVYGALIISPSPGATYPFTRP-HGEVPILLGEWWNRNPMDVVKQATQTGAAPNVSDAFTINGQPGDLYQCSSSDTIRVSVKSGESTLLRVINAALNTDLFFTVGSHTMTVVxxxxxxYTKPFQTNFLMLGPGQTTDVLVTADQSTGRYYMAARAYSSGQGVPFDNTTTVAILEYKGXXXXXXXXXXPNLPAYNDTQTATKFANALRSLASHDHPVFVPQNVDQNLFYTIGLGLINCPGQSCGGPNGSRFAASMNNASFVLPTTSSILEAQHFGMKGVFSGDFPDNPLVQFDYTAQSVSRSLWSPVKGTRVKVLNYNTTVQVILQGTNIFAGESHPIHLHGYDFYVVGSGFGNYNAKTDPQMFNLVDPPMRNTVNVPVNGWAAIRLVADNPGAWVMHCHLDVHITWGLAMVFVVSNG
B8LPE8_______________HIMSTSYSARFFWLFLVVNFWFTTALADIRSYTFVIRAQPVTRLCQTNDIITVNGQFPGPTLNVTSGDTLVVKVLNYARYDVTIHWHGVRQIRTAWADGPEFITQCPIRPGGSYTYRFTLTDQEGTLWWHAHSSWLRATVYGSLIIYPKEGTKYPFPQPCHEPEPIILGEWWNRNPIDVVNQATQTGAPPNISDAFTINAQPGDLYPCSSSDTYRLSVKAGESYLLRIINAALNAELFFTVADHVLMVVxxxxxxYTKLLHTEVVMLGPGQTTDVLLIANKPVGKYYIAARAYASAQGIPFDNTTTTAILDYEGSSSSSPVSP--NLPAYNDTQTATQFTTGLRSLGSPDHPVNAPFNIDENLFFTVGLGLLDCPGQPCGGPNGKRSTASMNNVSFVFPKTFSLLQAHYFGIQGVFTKDFPDNPPMQFDYTAQNVSTALWSPVRGTKVKVLKYNSAVQIILQGTSIVSAENHPIHLHGYDFYIVGEGFGNFDPQRDPMTFNLIDPPQRNTVGVPVNGWSAIRFVADNPGIWLMHCHLDVHITWGLAMAFLVENG

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
1469		50		50	1.0
1474	50			50	1.0
1477		50		50	1.0
1480		50	50		1.0
1492		60	40		1.0
1501		80		20	0.995493
1519			40	60	1.0
1536		50	50		1.0
1542			50	50	1.0
1546		50		50	1.0
1547		50	50		1.0
1551			50	50	1.0
1564	50		50		1.0
1567	50			50	1.0
1571	50		50		1.0
1579	60		40		1.0
1623		20		80	0.995493
1663			60	40	1.0
1682		75	25		0.996473
1724			33	66	0.997452
1751	66	33			0.997452
1769	33		66		0.997452
1771		33		66	0.997452
1778		33	66		0.997452
1807		66		33	0.997452
1808	33			66	0.997452
1810		66		33	0.997452
1820		33		66	0.997452
1826		66	33		0.997452
1827		66	33		0.997452
1838	66	33			0.997452
1928	66		33		0.997452
1932	66	33			0.997452
1944			66	33	0.997452
1946		33	66		0.997452
1955	66			33	0.997452
1975		66		33	0.997452
1988		33	66		0.997452
1991		66		33	0.997452
1997		66	33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain