SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37020

Length: 1530 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37020 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	palmitoyl protein thioesterase family protein [Arabidopsis thaliana] ref\|NP_850728.1\| palmitoyl protein thioesterase family protein [Arabidopsis thaliana] emb\|CAB87871.1\| palmitoyl-protein thioesterase precursor-like [Arabidopsis thaliana] gb\|AAN13045.1\|	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	palmitoyl-(protein) hydrolase activity	GO:0008474	Molecular Function	0.0	-
Sma3	protein modification process	GO:0006464	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Palmitoyl protein thioesterase	IPR002472	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G60340.1	alpha/beta-Hydrolases superfamily protein chr3:22304395-22306389 FORWARD LENGTH=338	70%
RefSeq	Arabidopsis thaliana	NP_191593.1	palmitoyl protein thioesterase family protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002326662.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRL7

Fln msg:

Fln protein: MTMASRLLLLLCTLALLPLAFSLPFIVLHGIGDKCKNRGVNHFTELLSNWSGSSGSCIEIGDGSMTSWTMPLEKQAECVCEKVKAMPELKNGYNMVGLSQGNVIGRAVIEFCDGGPPVYNMISLGGPHAGTASVPLCGTSFICALVDALIKGELYSDFVQEHLAPSGYLKIPTDISDYLKGCKFLPKLNNEKPDERNSTYKERFSSLKNLVLIMFEHDTVLIPRETSWFGYYPDGNFSVILPVNETALYKEDWIGLKTLDDAGKVKYFSVPGNHLGIRPSDMLKYVVPYLEEDAVIREMAQQPVLNS*

Protein Length: 309

Fln nts: ATGGGGATACGCATTTCCCACTGTGGACGAAACTCGAGATTCTTACAGGTCCCCACCTACCATTCCGGTTCGGCCAGACGAACAAAAGACTATGACTAGTTTTGTGGCATTTATTTATTCCGCACCCACGATTGGTGTGGAGATTGTTCAATAATCCTAAAACTGCAAAATCCTAACGGATTCGATCGTGAACCGGAGCTGGAGGCAG_-_ATGACCATGGCTTCTCGATTGTTGCTACTGCTCTGTACTCTGGCACTTCTTCCACTTGCGTTTTCACTCCCCTTCATCGTTTTGCATGGCATTGGTGACAAGTGCAAAAACAGAGGTGTTAACCACTTCACTGAGCTACTGAGCAATTGGTCTGGATCTTCAGGATCATGCATAGAAATTGGAGACGGTTCAATGACGTCCTGGACTATGCCTCTAGAGAAGCAGGCTGAATGTGTGTGCGAGAAGGTGAAAGCCATGCCAGAGTTGAAGAATGGGTACAACATGGTTGGTCTATCCCAGGGCAATGTGATAGGTCGTGCGGTCATTGAATTTTGTGATGGAGGGCCTCCTGTTTACAACATGATATCATTAGGGGGGCCACATGCTGGAACTGCTTCTGTACCTCTTTGTGGGACATCATTTATCTGTGCGCTTGTCGATGCTTTAATTAAGGGCGAACTATATTCTGATTTTGTGCAGGAACATCTAGCTCCGAGTGGTTATCTAAAAATACCAACGGATATATCTGATTATTTAAAAGGTTGTAAGTTTCTACCAAAGCTTAACAATGAAAAGCCAGATGAGCGAAATTCCACATACAAGGAGCGCTTCAGTAGCCTTAAAAACTTGGTTCTAATTATGTTTGAGCACGATACTGTTTTGATACCACGCGAGACATCATGGTTTGGATATTATCCTGATGGAAATTTCAGTGTGATATTGCCTGTAAACGAGACTGCTCTGTATAAGGAAGATTGGATTGGCTTGAAGACCTTGGATGATGCGGGAAAAGTGAAATACTTCAGTGTACCTGGGAATCACCTTGGTATCCGTCCTAGTGACATGCTCAAGTACGTTGTTCCCTACTTAGAAGAAGATGCTGTTATCCGTGAAATGGCTCAACAGCCAGTCCTGAATTCATAA___AATGTTTACTGGAGAGAAGGCCATACAATTCGTTAGTAGTTTTTCTTGCAATTTATGAAAGAACCATGTAGTAAATTGTCAATTGTGAAAGCTTCTCTGTAATATTACAGCATAGTATTTTGGATGGCTGACTACATCACAAACTTACATGGCATCAAGAATATCTGTTACGTATGAAACTTCAAAGATTGTTTATCGCGGTATATTATAATGAATTGTATACCTCAACCTCACTTTTACTTGAACAAGTGTGAAAGAGATGATCCATCTCTTCATATTGCGCCATTCTTGCGTGATTTTCCAATATAAAATGTCTAGTACATGGGTTTTGTAATAGAGTTATTCGATTAAATTTTTAATGTAAATTATACTTAAATGTGTTTTGTGTGATCTCAAAA

Fln Alignment:

Contig37020___IVLHGIGDKCKNRGVNHFTELLSNWSGSSGSCIEIGDGSMTSWTMPLEKQAECVCEKVKAMPELKNGYNMVGLSQGNVIGRAVIEFCDGGPPVYNMISLGGPHAGTASVPLCGTSFICALVDALIKGELYSDFVQEHLAPSGYLKIPTDISDYLKGCKFLPKLNNEKPDERNSTYKERFSSLKNLVLIMFEHDTVLIPRETSWFGYYPDGNFSVILPVNETALYKEDWIGLKTLDDAGKVKYFSVPGNHLGIRPSDMLKYVVPYLEEDAVIREMAQQPVLNS
A9NRL7_______________IVLHGIGDKCKNKGVSHFTELLSNWSGSSGSCIEIGDGYMTSWTMPLEKQAEIVCEQVKAMPDLEDGYNIVGLSQGNVIGRGIIEFCDGGPPVYNMISLGGPHAGTASVPLCGTSFICELVDALIKGELYSDFVQEHLAPSGYLKIPTDISKYLKGCRFLPKLNNELPDERNSTYKERFSSLKNLILIMFEHDTVLIPRETAWFGYYPDGNFSVILPANETALYKEDWIGLKTLDDAGRVKYISVPGNHLGITPSDMLKHVVPYLEEDAVIREMAQQLVPNA

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
177		25		75	1.0
196	25			75	1.0
197	75	25			1.0
218	75			25	1.0
223		75		25	1.0
228	25		75		1.0
246		25	75		1.0
248		83		16	0.999991
251			75	25	1.0
279	75		25		1.0
282			25	75	1.0
303	75		25		1.0
335	44		55		1.0
391		50		50	1.0
441	50			50	1.0
487			40	60	1.0
490		40		60	1.0
491			40	60	1.0
515	40	60			1.0
537		40	60		1.0
591	40		60		1.0
602	80		20		0.995493
618			40	60	1.0
644	33	66			1.0
1125		25		75	0.996473
1137	16		83		0.994512
1155		16		83	0.994512
1365	35		42		1.0
1373	21		21	7	1.0
1388	15			84	0.999986
1404	11	22	66		0.999999
1405		12	75		0.975346
1406	50	12	37		1.0
1407		25		75	1.0
1408	12	25	62		1.0
1409	14	28	42	14	1.0
1410		50	50		1.0
1411		33	66		1.0
1413	80			20	0.995493
1417	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain