SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36971

Length: 1362 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36971

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Arginine/serine-rich splicing factor RSP41	-	-	1.825e-16	-

Source	Gene names
Sma3	AT2G46610; AT3G61860; AT4G25500; AT4g25500; AT5G52040; At2g46610; At3g61860; At4g25500; At5g52040; F21F14.30; GSVIVT00008658001; GSVIVT00026247001; H0716A07.4; M7J2.130; OSJNBa0020P07.8; Os02g0122800; Os04g0118900; OsI_05650; OsI_14641; OsJ_05182; OsJ_135

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	spliceosomal complex	GO:0005681	Cellular Component	-
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52040.2	ATRSP41, RS41, At-RS41 RNA-binding (RRM/RBD/RNP motifs) family protein chr5:21131081-21133318 FORWARD LENGTH=357	68%
RefSeq	Arabidopsis thaliana	NP_851174.1	arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002322436.1	predicted protein, partial [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTP2

Fln msg: Separated hits, possible frame ERROR between 637 and 694,

Fln protein: MKPLYCGNIEYEVRQSEIERLFGKYGRVERVDMKSGYAFVYMEDERDAEDAIRALDKTEFGRQRRRLTVEWTKHAERGLRRSEDGRRSVTGLKPTKTLFVINFDPYDTRVKDLERHFEPYGEVLNVRIRRNFAFIHYGSQEEATKAFDATHMSKLLDRVITVEYAQREDGxxxxxxxxxxxxxxxxxxxxEDHGRDRSASPIYGRRAMRGSPDYGRAPSPYARRPERCSPDYGRATSPIYARRPEKRGADYGRAASPVYASRPQRNSPDYARDASPLLERNRSRSPVRRS*

Protein Length: 292

Fln nts: GGGTGACCTTACTATAGCACTCACCTTGCCTACTCTCGGTAGCTAAGATAGTCTTACGGATCTGTTCGTCTCGCTGAGCAATCTCTTCTCGATCCAATCGTTGAAGAAGACACCGGGGTTAGCC_-_ATGAAGCCGTTGTACTGTGGAAATATAGAGTACGAGGTTCGGCAGTCAGAGATCGAGCGTTTGTTTGGAAAATATGGAAGAGTCGAGAGGGTTGATATGAAATCAGGTTATGCTTTTGTCTATATGGAAGATGAGCGTGATGCAGAGGATGCAATCCGAGCACTTGACAAGACAGAATTTGGCAGGCAAAGGCGTCGGCTAACCGTAGAGTGGACAAAGCATGCTGAACGAGGTCTTCGCCGATCTGAAGATGGAAGAAGATCTGTGACAGGTTTGAAGCCAACAAAAACATTATTTGTGATAAACTTTGACCCGTACGACACCAGAGTCAAGGACCTCGAAAGACATTTTGAGCCCTATGGTGAGGTCCTCAATGTAAGGATTAGAAGGAATTTTGCATTTATTCATTACGGATCACAAGAAGAAGCAACAAAAGCTTTTGACGCCACCCATATGAGCAAATTATTAGATAGGGTAATCACAGTGGAATACGCCCAACGTGAGGATGGCAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAGGATCATGGCCGTGATCGATCTGCAAGTCCTATCTATGGAAGGCGTGCAATGAGAGGCAGTCCTGATTATGGAAGGGCTCCAAGTCCTTATGCTAGGCGTCCAGAGAGGTGCAGTCCTGACTATGGTAGGGCTACAAGTCCTATTTATGCAAGGCGTCCAGAAAAGCGTGGTGCTGACTATGGCAGGGCTGCAAGTCCTGTTTACGCCAGCCGCCCACAGAGGAATAGTCCAGATTATGCCAGAGATGCAAGCCCCCTTCTTGAACGGAACCGCAGTCGATCACCAGTGAGGCGGTCATGA___CTATCAATCGCGCAGAATCATTCTTGAATCAGTCCAGCACAAGGCAATGGATATTACATCACGAAATAATGAGATGCCAATACTGAGCAGCCCTGATCATATTTTGCAAACAGTTTTTAGAAGGAAATACCACAAAGTTTGTGGTTAACCTGTAAATTTGCTGTTCAGCTAGCAAGATTGATAAGCTCTTGACCATAACTACTTAATTGTTAAGTGAGGGATAAGGAGCATGAACGGTATTATTGGGAAGAAGTTAGACATGGGGAGCCTGTAAAGTATTCATGGCTAGATTTTTGATCTGTACTTTCGTATGTTTTTCAGAAACACTACATTTAGTGCCCTAAAAGAATTACAGTTTGATTAGTT

Fln Alignment:

Contig36971___MKPLYCGNIEYEVRQSEIERLFGKYGRVERVDMKSGYAFVYMEDERDAEDAIRALDKTEFGRQRRRLTVEWTKHAERGLRRSEDGRRSVTGLKPTKTLFVINFDPYDTRVKDLERHFEPYGEVLNVRIRRNFAFIHYGSQEEATKAFDATHMSKLLDRVITVEYAQREDGNxxxxxxxxxxxxxxxxxxxEDHGRDRSASPIYGRRAMRGSPDYGRAPSP-YARRPERCSPDYGRATSPIYARRPEKRGADYGRAASPVYASRPQRNSPDYARDASPLLE
A9NTP2_______________MKPLYCGNIEYEVRQSEIERLFGKYGRVERVDMKSGYAFVYMEDERDAEDAIRALDKTEFGRQRRRLTVEWTKHAERGLRRSEDGRRSVTGLKPTKTLFVINFDPYDTRARDLERHFEPYGKVLNVRIRRNFAFIHYGTQEEATKAFDATHMSTLLDRVITVEYAQREDGNxxxxxxxxxxxxxxxxxxxEDHGRDRSASPIYGRRAMRGSPDYGRAPSPTYARRPERCSPDYGRATSPIYSRRPEKHGSDYGRAASPVYASRPQKNSLDYGRDASPLLE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
150		16		83	0.994512
555	22		77		0.999999
646		14	85		0.993533
647	14		85		0.993533
649			85	14	0.993533
693			60	40	1.0
773			66	33	0.997452
774			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain