SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36952

Length: 1372 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36952

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucose 6-dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RLR7_RICCO	-	-	2.0e-30	76%
FL-Next	sp=UDP-glucose 6-dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	UDP-glucose dehydrogenase	-	-	5.203e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	UDP-glucose 6-dehydrogenase.	EC:1.1.1.22	-	2.575e-35	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	2.575e-35	%
Sma3	Ascorbate and aldarate metabolism	00053	2.575e-35	%
Sma3	Starch and sucrose metabolism	00500	2.575e-35	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	2.575e-35	%
Sma3	Metabolic pathways	01100	2.575e-35	%
Sma3	Biosynthesis of secondary metabolites	01110	2.575e-35	%

Source	Gene names
Sma3	170F8.20; At1g26570; At3g29360; At5g15490; At5g39320; CHLREDRAFT_129524; CHLREDRAFT_185081; CHLREDRAFT_205498; EZY12; GSVIVT00016253001; GSVIVT00021053001; GSVIVT00030060001; K3K3.170; LOC_Os03g31210; LOC_Os03g40720; LOC_Os03g55070; LOC_Os12g25690; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	UDP-glucose 6-dehydrogenase activity	GO:0003979	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	IPR001732	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	IPR014026	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	IPR014027	-	-
Sma3		IPR014028	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Nucleotide sugar dehydrogenase	IPR017476	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G15490.1	UDP-glucose 6-dehydrogenase family protein chr5:5027872-5029314 REVERSE LENGTH=480	2.0e-35	74%
RefSeq	Arabidopsis thaliana	NP_197053.1	UDPglucose 6-dehydrogenase [Arabidopsis thaliana]	2.0e-35	74%
RefSeq	Populus trichocarpa	XP_002324103.1	predicted protein [Populus trichocarpa]	1.0e-35	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ50

Fln msg: your sequence is shorter than subject: 101 - 480. Was predicted as Complete, but is very much shorter than de subject

Fln protein: MVKICCLGAGYVGGPTMAIIALKCPAIEVVVVDISSARIAAWNSDQLPIYEPGLDEVVKGCRGKNLFFIFDVEKLREIGFIVYSIGKPLDPWVKDLPASA*

Protein Length: 102

Fln nts: ACACGCTGTCAATGTTTTTTTCGATCATGTGGGCACACGTTTTCAGCAAATTTGGACCAATTTTGCGTATTTGACTTGGATTCAAAGTTTCTCCTGCCATTAAACGCTTATGTTGAAAAGTTTGCCGACGAGGTGTCATTGATATTGTCAAAAAAAATGATGGCTTTTCCTAGATCTGGACAGTGAAAACTCAAAAGAATAGAGATCTTAACTCTTATTTTATGATTTTCATACATGGTGCTGACAGTTGGCCGTGCCGGTGGTGAAGAAGTCAGATCTTCAACGGGTTTGGACGCGCTAAAAGATATTTAAGCAGTGCGGGGCGAGTGTTCTAAACGCGCGCTTCTATCTTGAGCTCCCGTCCGCCGGCCGATACAGGTCTCTTTGGATATCTTTGGATCTTTGAGACCGATCAGGGTTTCTTTGCTGGATTCCCTTTTCATTTGCACTTATCTGCCCAATTTCACTTCAGCAGGTAAAG_-_ATGGTGAAGATCTGCTGTCTTGGAGCTGGATATGTTGGTGGGCCAACAATGGCCATCATTGCACTAAAATGTCCTGCCATTGAAGTCGTTGTCGTAGATATTTCATCTGCAAGGATTGCCGCATGGAATAGTGACCAGCTGCCAATCTATGAGCCTGGTCTTGATGAAGTCGTAAAAGGTTGCAGAGGGAAAAACTTGTTTTTCATTTTTGATGTGGAGAAGCTTAGGGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCTCTAGATCCGTGGGTGAAAGACCTCCCTGCATCAGCATAG___AAGATTGAAGTCCTTTTTGTCTCTTCATATTAGACAGTGGTTCTGCAAACTTTACTGTCAGAAGAGGCTTTCAGAAGATGGTGATTGAACTTGATTCTTAGAAACCATGGGAATGGGTTTCACTTTTCACGTTGCTTTGATTAGGTGGATGGTATTAGCTATCATTATTTCTAGAAGGATCTATTGTTTTTAGCACAGATGGAATCAATAACTTAGAAACTTTTTGTTTGAGTAGCATATCTTTTAGCAGAATCCTCTGCCATTGATTATCTGGAGTTCTATATAAAGGATCATTCAGATGGTATTGTTTTCCGGTCTGGTAAAATCCTATGGGGTTGTAGGGTTGTCTGGATTTTTGGAGATTTTAAACTCCTGATATTTTTTTTCTAGTCCTTTGATACCTAGTTGCATATGCCTACATTTTTGAAATTCTATGGGCATCTATGTGCGTTATATTCTAGAATTTGAAGGTTTTGCCCTGAAGTTTGGAGCTATATGGTAATCTGTGACGTGTTCCATTTTATCCAATGAATGCTCTGCCTGGAAATTTGGTGAATTGGTATTTCTATAAATGTGACTGGTTTTATC

Fln Alignment:

Contig36952___MVKICCLGAGYVGGPTMAIIALKCPAIEVVVVDISSARIAAWNSDQLPIYEPGLDEVVKGCRGKNLFFIFDVEK-LREIGFIVYSIGKP
B8LQ50_______________MVKICCLGAGYVGGPTMAIIALKCPAIEVVVVDISSARIAAWNSDQLPIYEPGLDEVVKSCRGKNLFFSSDVEKHVLEADIIFVSVNTP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
364		75		25	0.996473
392	12			87	0.992554
393	12	87			0.992554
395			12	87	0.992554
417			88	11	0.923564
420	11			88	0.923564
421		11		88	0.923564
425			11	88	0.923564
430		11	88		0.923564
432		11		88	0.923564
436	11	88			0.923564
505	88		11		0.923564
710	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain