SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36782

Length: 1933 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36782

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAU94425.1\| At1g65030 [Arabidopsis thaliana] gb\|AEE34317.1\| WD40 domain-containing protein [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	22%

Source	Gene names
Sma3	At1g65030; F16G16.2; GSVIVT00021329001; Os12g0615900; OsI_39122; OsJ_36880; PHYPADRAFT_136779; POPTRDRAFT_1095652; RCOM_0229960;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G65030.1	Transducin/WD40 repeat-like superfamily protein chr1:24156798-24158511 FORWARD LENGTH=345	46%
RefSeq	Arabidopsis thaliana	NP_176683.1	WD40 domain-containing protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002318775.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 416 - 314

Fln protein: MTLVAGSYRKIHIRMEIETKEEENNEEEEGFGLKPIFTYPAHMGPIKCLAMSGPVLVTGGMDDTIKIFDLASYCEMGSLLQHTAAITSLCFYGGESSVKSGGSTCPRNLLSGSLDGNICIWDSDLWVHLKTLKAHKKGVNDLSIHPSGRLALSVGRDHLLSMFDLIKGRCTFKSNLQKEATAIEFDSKGGDTYSMVIEDVVSVHNAEDARLLHSLHHKKRVLCLAHTENGLLLTGGEEPTIQAWDLGTGKIAFTLENVHKSRIKGLAVLGSKSTTESDDNPYFIASASSDGLVRVWDVRMLNRDNPTPLIETESKARVTCLAGCTSKRVKKSPPIVSEGKVVLDNQETTLTSTETQGKSKDKDFSVGGIADDGKPEKMSRIALKKKKFKNILGIKGKKAMKLKGHNRSKGKSSEV*

Protein Length: 417

Fln nts: GTCGTGACCTTGGCTGTCACTCAAAACATATTGCCCTTTCCACAAGCCCTTGCATCCTTGCCACAAAAACTGCTTCCGCTCCTAATTTAGGTTTGATTTACTAACGTGTTTGAGGTTTGCAGTCTCATCAATTCAATCCCATCTGTGCTTGAAATTTTCAGTCAAATCAATTCAGTCTCCTGTGAACAACTCAATCGTTCACTTATTACAGTAAGTAAACCCACGATTTGACGACATAGCCCGTTGTACAG_-_ATGACTCTGGTGGCAGGCTCGTATAGAAAAATACATATTAGGATGGAGATTGAAACAAAAGAAGAAGAAAACAATGAAGAAGAAGAGGGTTTTGGTCTTAAACCCATATTCACCTACCCAGCTCACATGGGCCCTATCAAATGCCTTGCAATGTCAGGTCCAGTGCTGGTAACAGGGGGCATGGATGACACCATCAAGATTTTTGACCTTGCTTCCTACTGTGAAATGGGTTCTCTACTCCAACACACGGCCGCAATAACAAGCCTGTGCTTCTATGGAGGCGAGTCATCTGTGAAGTCCGGAGGTTCTACTTGTCCTAGAAACCTGCTAAGCGGTTCCCTGGATGGTAATATTTGCATATGGGATTCAGACTTGTGGGTGCACTTGAAAACCCTGAAAGCCCACAAGAAGGGTGTCAATGATCTGTCTATACATCCTTCCGGGAGGTTGGCTCTGTCAGTTGGCAGGGATCACCTTCTTAGCATGTTTGATCTTATTAAAGGGAGGTGTACTTTTAAATCAAATTTACAGAAAGAGGCAACTGCTATAGAATTTGATTCCAAGGGAGGGGACACTTATTCTATGGTTATTGAAGATGTTGTATCTGTTCACAATGCCGAGGATGCCAGGCTGCTTCATTCCTTACATCACAAGAAGAGAGTACTGTGTCTTGCTCATACCGAGAATGGATTGTTATTAACTGGTGGAGAAGAGCCAACTATTCAAGCGTGGGATCTAGGGACTGGAAAGATTGCATTTACTTTAGAGAATGTACACAAAAGTCGCATCAAAGGTCTTGCTGTGCTTGGATCAAAAAGTACTACTGAATCAGATGATAATCCTTATTTCATTGCATCAGCTTCATCAGATGGACTTGTGCGAGTCTGGGATGTGCGAATGTTAAATAGGGATAATCCAACTCCTCTTATAGAGACTGAGTCAAAGGCAAGAGTAACTTGTCTTGCTGGATGCACCTCAAAGAGGGTTAAGAAATCTCCGCCAATAGTTTCAGAAGGAAAGGTGGTATTGGATAACCAGGAAACAACATTAACTTCTACTGAGACACAGGGTAAAAGCAAAGATAAGGATTTTTCTGTTGGTGGGATTGCTGATGATGGTAAACCTGAAAAGATGTCACGTATTGCATTGAAAAAGAAAAAATTCAAGAATATCTTAGGTATCAAGGGCAAAAAGGCCATGAAGTTGAAAGGACATAACAGATCGAAAGGAAAAAGTTCAGAAGTTTGA___TTTCCACTGGAAGACTTGGAATAATTTTCTGAGGTTATTCTTAGATGATTTGGGAGATCCTCTAGAACATGGGCTATAGGATTCTGCTGTTTTTTCAAGACAGTTTGGTTCCAAGAAGTTAAGCTGCATAGCCATTATTTTCAATTCGATGTTTCAGCTGAACAGCCGAGACCATTTGAGACGCCTCTTGGCATGAAGCAAAATCTCTCAAGGCGAGCATCTTGAAGTTTTTATGCAGTCCTCTCAAGGGATTGATGGGGGATTGCGGTGTACATTAGTGGTTCTAAAGTTCATATAAAAAGATATCGAGACATGGTCACCCTCAAAAATTTTGCGTCTTATTCCAATGGCTTTTTATTAGTTTCAGTCCTTACTGAGAGATGAGTTTAAATTCCTTGCATTGAAATGGAAAATCACCATTCTAGAGTGGCCAA

Fln Alignment:

Contig36782___FGLKPIFTYPAHMGPIKCLAMS--GPVLVTGGMDDTIKIFDLASYCEMGSLLQHTAAITSLCFYGGESSVKSGGSTCPRNLLSGSLDGNICIWDSDLWVHLKTLKAHKKGVNDLSIHPSGRLALSVGRDHLLSMFDLIKGRCTFKSNLQKE-ATAIEFDSKGGDTYSMVIEDVVSVHNAEDARLLHSL--HHKKRVLCLAHTENG-LLLTGGEEPTIQAWDLGTGKIAFTLENVHKSRIKGLAVLGSKSTTESDDNPYFIASASSDGLVRVWDVRMLN
A9NPC1_______________YKLKHILT--GHKRAVSSVKFSADGKLLGSASADKSVRIWSAGDGSAKRELQGHAEGVSDMAW-----------SSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKY-------CISSTFSVTNGKYIVSGSEDNCVYLWDLQARN

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1202	83		16		1.0
1279		27		72	1.0
1460	83			16	0.994512
1682	14		85		0.999981
1698		85		14	0.999981
1734	9		90		0.999842
1737			90	9	0.999842
1828	72		9		0.999994
1910	88	11			0.923564
1912	77			11	0.968132

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain