SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36770

Length: 3197 nt

UniGene Fasta

>sp_v3.0_unigene36770
TGACCTTGGCTGTCACTCAATTTTTTCCTTCCTTTCTTCGTTCTCTGCGCCATCATGGGTAGTTGAATCTAATCTCGCAGTATCAATTGCAGATCTTTTGTCTTGCAGCCAAAATCTTGGAGTGAGGGTAGCTGTATCCCGTGTCTCTAGGTTTTGTAATGCCCCGCTGAGCTTCTGCTTGTTACGTTGCAGATTTTGTTTGTCTCAAGGGGCCGTTGTTGAAGAGGAGAAGAGAAGCAGGAGAAGAAGGGAGAGTGACAATGTTATTATTATTCCACCTGTGGACATTTCCAGCTGCCCAGATCTAATACTTGGTGCCCCCTAGTGCTCACGTTTATGTTGTTATTGTTGTGCCCCAAACAAGATTGGTGTAGGACACTTTTTTGAGCTTTTTGACTCCTGACTACTATTTTTGGGCCTATATATAAGAAATTAGGGTTTATGAGACCTGCTGGTGCGTTTAGGTCGAGGGATTTTGTTGTGAAGAACTGAACTAGCAGTGAACTGTGTGGGCAGAAAGCAGGGATTGCTGGGTTTGACTTTATCAATATGCCGGCTGGTTTTATGATCCCGGCTAGACATGTGCCCCCGTTGATGGCTCGTCATACTAAAGCTGGTTATACAACCTCTTCCGGATTATCACTTGCACAGCCGAATATGGCGGAAGGACAGTTCGATATGAGCCAAACAGCTGATAGTGAGATTGCTAAAATAAGAGAAGAAGAGTTTGAGAGCAAATCGGGCAGTGACAACGTTGAAGGGGCGTCTGGAGAAGATCAGGATGGCGAACGCAGGCCTCGCAAAAAGCGATATCATCGCCATACTCAGCACCAAATTCAAGAGATGGAAATGTTTTTTAAAGAATGCCCGCATCCAGATGACAAGCAGAGAAAAGAGCTCAGTAGAGAACTTGGCCTGGAACCTCTGCAAGTCAAATTTTGGTTCCAGAATAAACGCACTCAGATGAAGACTCAACACGAGCGCCACGAGAACACTCAGCTGAGATCAGAGAATGAGAAGCTCAGATCAGAGAATATGCGGTACAGAGAGGCACTAAACAATGCTTCCTGTCCTAACTGTGGAGGTCCAGCAGCTTTGGGAGAGATGTCATTCGACGAACAACAACTGCGGATGGAAAATGCAAGGCTGAGAGAGGAGATCGATCGAATATCTGGTATAGCTGCCAAGTACGTGGGCAAGCCCTTGCTTTCATTCGGGCCATCACCTCTCAGTTCCCTCCCTCGTTCGAATCTTGATCTGGCAGTGGGAAGCTATGGTGTGCAGCCCAACATAGGGCCAGATATCTATGGATCGTCATCAGGGGGGGAAATTGGAAACAGGTCTCTTGTTGGTCCTACAGAAGGTGAAAAACCTATGGTTGTAGAGTTAGCTGTTGCAGCCATGGAAGAATTAGTGAGAATGGCACAACTGGGGGAACCCCTATGGTCCTCACGTCCGGAGGATGGCACTGATATTCTTAATGAAGAGGAATATATTCGCACCTTTCCCAGAGGCATAGGTCCGAGGCCCTATGGATTAAAGGCTGAAGCATCTCGAGAGACTGCGGTTGTAATCATGAATGCTATTAATATGGTTGAGACTCTAATGGATGTGAATCAATGGGCAAGCATGTTTCCTGGCATTGTATCACGACCAGTTACCGTGGATGTTTTTTCAACAGGCGTTGCGGGCAACTACAATGGTGCTTTGCAAGTGATGCATGCAGAGTTTCAAGTACCCTCTCCACTAGTGCCAACTCGGGAAAATTACTTCGTGAGATATTGCAAGCAGCACTCAGACACAATATGGGCTGTTGTTGATGTCTCTCTGGACAGTTTACGAGGGAATTCTTCTTCAGTGATTAGATGCCGAAGGCGACCATCTGGTTGTCTCATTCAAGAGATGCCAAATAGCTATTCTAAGGTGACTTGGGTGGAGCATGTTGAAGCTGATGACAGGGCAGTGCACCATATCTATCGTCAGCTGGTAAATTCTGGTATGGCTTTTGGTGCAAAACGATGGATAGCAACTTTGCAGAGGCAATGTGAGCGTCTAGCAAGTGTCTTGGCTAGCAATATCCCATCAAGGGACCTTGGGGTTATACCTAGCCCTGAAGGAAGAAAGAGCATACTTAAGTTAGCTGAGCGCATGGTCACAAGCTTCTGCGCTGGTGTAAGTGCATCAACTGCACATACTTGGACAACTCTGTCTGGAAGCGGTGCAGAAGACGTTCGTGTGATGACCAGAAAGAGTGTAGATGATCCAGGCAGGCCTCCCGGCATTATTCTTAGTGCTGCAACATCCCTCTGGCTGCCTGTGCCCCCCAAAAAGGTGTTTGATTTCCTTCGAGACGAAAATTCCAGGAATGAGTGGGATATCCTATCTAATGGAGGGTTGGTTCAAGAAGTCGATCACATTGCCAACGGACAAGATCCTGGGAATTGTGTATCTCTTCTACGTGTTAATACTGTGAATTCCAACCAAAGTAATATGCTTATACTTCAGGAGAGCTGCACAGATGCATCTGGGTCGTTCGTAATTTATGCTCCAGTGGATATTGTTGCCATGAATGTTGTGCTCAGTGGAGGTGACCCAGATTATGTGGCTCTTCTGCCATCTGGGTTTGCAATTTTACCAGATGGGCCAAAGTGCATAGCAGTGACCAATTCAGGCATTAACGACCTAGGCAGTGGAGGATCTTTACTCACTGTGGCTTTTCAAATTTTGGTTGACTCTGTGCCAACGGCTAAATTATCCCTGGGTTCTGTTGCAACAGTGAATAGTCTCATTTCATGCACTGTGGACAGGATTAAAGCTGCTGTTACTCGTGAGAATCCATGAAAGAGAAGTCTTCTAGCTATTCAGGGAAGGGGGCTGTCGTCCTGCGAAAGTCAAGAGCGCACCACATATATACCTTGCCCTGTGGTATGGTAAGAAGCGTGCTTATGCACCTACTTCACCACTATGCAAGGGTAGTGGTTCGGGTATTGACTTTCAACCAGCTACAAAGCACAAAAAACTTGCTTATAATTGTTTGTAAAGTCAGGGATCCTTTGTATTCCTTTAATTCAAAGCCATGCAAGTTGCTTTTGTTCTTTCTGATATAAAAATCATCTCCTGCAACTCTTTTGACTTCCAATTTGTTTCTATTTTCTACGTTTTTGCATGAAATAACTTTATAGATTTGAACTTTTTTG

Ace file of the UniGene sp_v3.0_unigene36770

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB	-	-	95%
FL-Next	tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	97%
Sma3	Homeobox 1	-	-	-

Source	Gene names
Sma3	HB1;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Lipid-binding START	IPR002913	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G04890.1	PDF2 protodermal factor 2 chr4:2476970-2480090 REVERSE LENGTH=743	72%
RefSeq	Arabidopsis thaliana	NP_567274.1	homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002302880.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9FR59

Fln msg:

Fln protein: MPAGFMIPARHVPPLMARHTKAGYTTSSGLSLAQPNMAEGQFDMSQTADSEIAKIREEEFESKSGSDNVEGASGEDQDGERRPRKKRYHRHTQHQIQEMEMFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRSENEKLRSENMRYREALNNASCPNCGGPAALGEMSFDEQQLRMENARLREEIDRISGIAAKYVGKPLLSFGPSPLSSLPRSNLDLAVGSYGVQPNIGPDIYGSSSGGEIGNRSLVGPTEGEKPMVVELAVAAMEELVRMAQLGEPLWSSRPEDGTDILNEEEYIRTFPRGIGPRPYGLKAEASRETAVVIMNAINMVETLMDVNQWASMFPGIVSRPVTVDVFSTGVAGNYNGALQVMHAEFQVPSPLVPTRENYFVRYCKQHSDTIWAVVDVSLDSLRGNSSSVIRCRRRPSGCLIQEMPNSYSKVTWVEHVEADDRAVHHIYRQLVNSGMAFGAKRWIATLQRQCERLASVLASNIPSRDLGVIPSPEGRKSILKLAERMVTSFCAGVSASTAHTWTTLSGSGAEDVRVMTRKSVDDPGRPPGIILSAATSLWLPVPPKKVFDFLRDENSRNEWDILSNGGLVQEVDHIANGQDPGNCVSLLRVNTVNSNQSNMLILQESCTDASGSFVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPKCIAVTNSGINDLGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKAAVTRENP*

Protein Length: 765

Fln nts: TGACCTTGGCTGTCACTCAATTTTTTCCTTCCTTTCTTCGTTCTCTGCGCCATCATGGGTAGTTGAATCTAATCTCGCAGTATCAATTGCAGATCTTTTGTCTTGCAGCCAAAATCTTGGAGTGAGGGTAGCTGTATCCCGTGTCTCTAGGTTTTGTAATGCCCCGCTGAGCTTCTGCTTGTTACGTTGCAGATTTTGTTTGTCTCAAGGGGCCGTTGTTGAAGAGGAGAAGAGAAGCAGGAGAAGAAGGGAGAGTGACAATGTTATTATTATTCCACCTGTGGACATTTCCAGCTGCCCAGATCTAATACTTGGTGCCCCCTAGTGCTCACGTTTATGTTGTTATTGTTGTGCCCCAAACAAGATTGGTGTAGGACACTTTTTTGAGCTTTTTGACTCCTGACTACTATTTTTGGGCCTATATATAAGAAATTAGGGTTTATGAGACCTGCTGGTGCGTTTAGGTCGAGGGATTTTGTTGTGAAGAACTGAACTAGCAGTGAACTGTGTGGGCAGAAAGCAGGGATTGCTGGGTTTGACTTTATCAAT_-_ATGCCGGCTGGTTTTATGATCCCGGCTAGACATGTGCCCCCGTTGATGGCTCGTCATACTAAAGCTGGTTATACAACCTCTTCCGGATTATCACTTGCACAGCCGAATATGGCGGAAGGACAGTTCGATATGAGCCAAACAGCTGATAGTGAGATTGCTAAAATAAGAGAAGAAGAGTTTGAGAGCAAATCGGGCAGTGACAACGTTGAAGGGGCGTCTGGAGAAGATCAGGATGGCGAACGCAGGCCTCGCAAAAAGCGATATCATCGCCATACTCAGCACCAAATTCAAGAGATGGAAATGTTTTTTAAAGAATGCCCGCATCCAGATGACAAGCAGAGAAAAGAGCTCAGTAGAGAACTTGGCCTGGAACCTCTGCAAGTCAAATTTTGGTTCCAGAATAAACGCACTCAGATGAAGACTCAACACGAGCGCCACGAGAACACTCAGCTGAGATCAGAGAATGAGAAGCTCAGATCAGAGAATATGCGGTACAGAGAGGCACTAAACAATGCTTCCTGTCCTAACTGTGGAGGTCCAGCAGCTTTGGGAGAGATGTCATTCGACGAACAACAACTGCGGATGGAAAATGCAAGGCTGAGAGAGGAGATCGATCGAATATCTGGTATAGCTGCCAAGTACGTGGGCAAGCCCTTGCTTTCATTCGGGCCATCACCTCTCAGTTCCCTCCCTCGTTCGAATCTTGATCTGGCAGTGGGAAGCTATGGTGTGCAGCCCAACATAGGGCCAGATATCTATGGATCGTCATCAGGGGGGGAAATTGGAAACAGGTCTCTTGTTGGTCCTACAGAAGGTGAAAAACCTATGGTTGTAGAGTTAGCTGTTGCAGCCATGGAAGAATTAGTGAGAATGGCACAACTGGGGGAACCCCTATGGTCCTCACGTCCGGAGGATGGCACTGATATTCTTAATGAAGAGGAATATATTCGCACCTTTCCCAGAGGCATAGGTCCGAGGCCCTATGGATTAAAGGCTGAAGCATCTCGAGAGACTGCGGTTGTAATCATGAATGCTATTAATATGGTTGAGACTCTAATGGATGTGAATCAATGGGCAAGCATGTTTCCTGGCATTGTATCACGACCAGTTACCGTGGATGTTTTTTCAACAGGCGTTGCGGGCAACTACAATGGTGCTTTGCAAGTGATGCATGCAGAGTTTCAAGTACCCTCTCCACTAGTGCCAACTCGGGAAAATTACTTCGTGAGATATTGCAAGCAGCACTCAGACACAATATGGGCTGTTGTTGATGTCTCTCTGGACAGTTTACGAGGGAATTCTTCTTCAGTGATTAGATGCCGAAGGCGACCATCTGGTTGTCTCATTCAAGAGATGCCAAATAGCTATTCTAAGGTGACTTGGGTGGAGCATGTTGAAGCTGATGACAGGGCAGTGCACCATATCTATCGTCAGCTGGTAAATTCTGGTATGGCTTTTGGTGCAAAACGATGGATAGCAACTTTGCAGAGGCAATGTGAGCGTCTAGCAAGTGTCTTGGCTAGCAATATCCCATCAAGGGACCTTGGGGTTATACCTAGCCCTGAAGGAAGAAAGAGCATACTTAAGTTAGCTGAGCGCATGGTCACAAGCTTCTGCGCTGGTGTAAGTGCATCAACTGCACATACTTGGACAACTCTGTCTGGAAGCGGTGCAGAAGACGTTCGTGTGATGACCAGAAAGAGTGTAGATGATCCAGGCAGGCCTCCCGGCATTATTCTTAGTGCTGCAACATCCCTCTGGCTGCCTGTGCCCCCCAAAAAGGTGTTTGATTTCCTTCGAGACGAAAATTCCAGGAATGAGTGGGATATCCTATCTAATGGAGGGTTGGTTCAAGAAGTCGATCACATTGCCAACGGACAAGATCCTGGGAATTGTGTATCTCTTCTACGTGTTAATACTGTGAATTCCAACCAAAGTAATATGCTTATACTTCAGGAGAGCTGCACAGATGCATCTGGGTCGTTCGTAATTTATGCTCCAGTGGATATTGTTGCCATGAATGTTGTGCTCAGTGGAGGTGACCCAGATTATGTGGCTCTTCTGCCATCTGGGTTTGCAATTTTACCAGATGGGCCAAAGTGCATAGCAGTGACCAATTCAGGCATTAACGACCTAGGCAGTGGAGGATCTTTACTCACTGTGGCTTTTCAAATTTTGGTTGACTCTGTGCCAACGGCTAAATTATCCCTGGGTTCTGTTGCAACAGTGAATAGTCTCATTTCATGCACTGTGGACAGGATTAAAGCTGCTGTTACTCGTGAGAATCCATGA___AAGAGAAGTCTTCTAGCTATTCAGGGAAGGGGGCTGTCGTCCTGCGAAAGTCAAGAGCGCACCACATATATACCTTGCCCTGTGGTATGGTAAGAAGCGTGCTTATGCACCTACTTCACCACTATGCAAGGGTAGTGGTTCGGGTATTGACTTTCAACCAGCTACAAAGCACAAAAAACTTGCTTATAATTGTTTGTAAAGTCAGGGATCCTTTGTATTCCTTTAATTCAAAGCCATGCAAGTTGCTTTTGTTCTTTCTGATATAAAAATCATCTCCTGCAACTCTTTTGACTTCCAATTTGTTTCTATTTTCTACGTTTTTGCATGAAATAACTTTATAGATTTGAACTTTTTTG

Fln Alignment:

Contig36770___MPAGFMIPARHVPPLMARHTKAGYTTSSGLSLAQPNMAEGQFDMSQTADSEIAKIREEEFESKSGSDNVEGASGEDQDGERRPRKKRYHRHTQHQIQEMEMFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRSENEKLRSENMRYREALNNASCPNCGGPAALGEMSFDEQQLRMENARLREEIDRISGIAAKYVGKXXXXXXXXXXXXXXXXXXXXAVGSYGVQPNIGPDIYGSSSGGEIGNRSLVGPTEGEKPMVVELAVAAMEELVRMAQLGEPLWSSRPEDGTDILNEEEYIRTFPRGIGPRPYGLKAEASRETAVVIMNAINMVETLMDVNQWASMFPGIVSRPVTVDVFSTGVAGNYNGALQVMHAEFQVPSPLVPTRENYFVRYCKQHSDTIWAVVDVSLDSLRGNSSSVIRCRRRPSGCLIQEMPNSYSKVTWVEHVEADDRAVHHIYRQLVNSGMAFGAKRWIATLQRQCERLASVLASNIPSRDLGVIPSPEGRKSILKLAERMVTSFCAGVSASTAHTWTTLSGSGAEDVRVMTRKSVDDPGRPPGIILSAATSLWLPVPPKKVFDFLRDENSRNEWDILSNGGLVQEVDHIANGQDPGNCVSLLRVNTVNSNQSNMLILQESCTDASGSFVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPKCIAVTNSGINDLGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKAAVTRENP
Q9FR59_______________MPAGFIIPARHVPPLMARHTKAGYTTSSGLSLAQPNMAEGQFDMSQTADSEIAKIREEEFESKSGSDNVEGASGEDQDGERRPRKKRYHRHTQHQIQEMEMFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRSENEKLRSENMRYREALNNASCPNCGGPAALGEMSFDEQQLRMENARLREEIDRISGIAAKYVGKPLLSFGPSPLSSIPRSNLDLAVGSYGVQPNIGPDIYGSSSGGEIGNRSLVGPTEGEKPMVVELAVAAMEELVRMAQLGEPLWTSHPEDSTDILNEDEYIRTFPRGIGPRPYGLKAEASRETAVVIMNAINLVETLMDVNQWSSMFPGIVSRPFTVDVFSTGVAGNYNGALQVMHAEFQVPSPLVPTREIYFVRYCKQHSDSIWAVVDVSLDSLRGNSSSVIRCRRRPSGCLIQEMPNSYSKVTWVEHVEADDRAVHHIYRQLVNSGMAFGAKRWIATLQRQCERLASVLASNIPARDLGVIPSPEGRKSILKLAERMVTSFCAGVSASTAHTWTTLSGSGAEDVRVMTRKSIDDPGRPPGIILSAATSLWLPVPPKKVFDFLRDENSRNEWDILSNGGLVQEVDHIANGQDPGNCVSLLRVNTVNSNQSNMLILQESCTDASGSFVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDSPKCMAVTNSGINDLGTGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKAAVMRENP

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
80	85		14		0.993533
713	75		25		0.996473
1306		11		88	0.923564
1307	11	88			0.923564
1309	88			11	0.923564
1395	11		88		0.923564
1402		87		12	0.992554
1625			85	14	0.993533
1667		16		83	0.994512
1697	87		12		0.992554
1754		12		87	0.992554
1760		87		12	0.992554
1977	25	75			1.0
2664		81	18		0.999994
2727		11		88	0.999952
2728			11	88	0.999952
2730		11	88		0.999952
2737		11		88	0.999952
2738		88		11	0.999952
2743		88		11	0.999952
2746	88	11			0.999952
2826		11		88	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain