SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36737

Length: 203 nt

UniGene Fasta

>sp_v3.0_unigene36737
GTGACCTTGGCTGTCACTCAGTTTCTTTTGAGAGTCGATGGAGGAGCATCAGTTAATAACCTTCTCATGCAGATTCAAGCAGATCTATTGGGAAGTCCAGTGCTAAGACCCGCAGATACAGAGACTACTGCATTGGGCGCAGCATATGCTGCAGGTCTGGCGACTGGTGTTTGGACTGAGGAGCAGATATTTTCCTCTGGAGC

Ace file of the UniGene sp_v3.0_unigene36737

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycerol kinase [Pandanus amaryllifolius]	-	-	1.0e-13	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Glycerol kinase	-	-	1.063e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.3-	-	1.069e-24	-

Source	Gene names
Sma3	AT1G80460; At1g80460; CHLREDRAFT_128764; GK; GLR1; GSVIVT00003297001; GSVIVT00013124001; GYK; GYK2; H0811D08.16; H0821G03.7; MICPUCDRAFT_45227; MICPUN_79438; OGK1; OSTLU_45141; Os04g0647800; OsJ_16410; PHATR_50770; PHYPADRAFT_127293; POPTRDRAFT_810168; PO

Source	GOs	Term	Type	Identity
Sma3	glycerol kinase activity	GO:0004370	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	glycerol-3-phosphate metabolic process	GO:0006072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Glycerol kinase	IPR005999	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80460.1	NHO1, GLI1 Actin-like ATPase superfamily protein chr1:30246960-30249055 REVERSE LENGTH=522	1.0e-14	78%
RefSeq	Arabidopsis thaliana	NP_178161.1	glycerol kinase [Arabidopsis thaliana]	1.0e-14	78%
RefSeq	Populus trichocarpa	XP_002327412.1	predicted protein [Populus trichocarpa]	1.0e-18	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV89

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 67 - 534

Fln protein: VTLAVTQFLLRVDGGASVNNLLMQIQADLLGSPVLRPADTETTALGAAYAAGLATGVWTEEQIFSSG

Protein Length: 68

Fln nts: GTGACCTTGGCTGTCACTCAGTTTCTTTTGAGAGTCGATGGAGGAGCATCAGTTAATAACCTTCTCATGCAGATTCAAGCAGATCTATTGGGAAGTCCAGTGCTAAGACCCGCAGATACAGAGACTACTGCATTGGGCGCAGCATATGCTGCAGGTCTGGCGACTGGTGTTTGGACTGAGGAGCAGATATTTTCCTCTGGAGC

Fln Alignment:

Contig36737___QFLLRVDGGASVNNLLMQIQADLLGSPVLRPADTEXXXXXXXXXXXXXXXVWTEEQIFSSG
A9NV89_______________EFLLRVDGGASVNNLLMQIQADLMGSPVLRPADTETTALGAAYAAGLATGVWTEEQIFSSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain