SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36736

Length: 667 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene36736 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance-associated protein 1, 3 (Mrp1, 3), abc-transoprter, putative n=1 Tax=Ricinus communis RepID=B9RIN7_RICCO	-	-	0.0	66%
FL-Next	sp=ABC transporter C family member 10; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Multidrug resistance protein ABC transporter family	-	-	5.973e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	6.888e-07	-

Source	Gene names
Sma3	At1g04120; At3g13080; At3g59140; EST2; F17J16.190; F20D22.11; GSVIVT00002478001; GSVIVT00002482001; GSVIVT00002485001; GSVIVT00002487001; GSVIVT00002490001; GSVIVT00006470001; GSVIVT00006491001; GSVIVT00028494001; GSVIVT00034195001; GSVIVT00034196001; GSV

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G59140.1	ATMRP14, MRP14, ABCC10 multidrug resistance-associated protein 14 chr3:21863519-21868701 REVERSE LENGTH=1453	62%
RefSeq	Arabidopsis thaliana	NP_191473.2	multidrug resistance-associated protein 14 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002331826.1	multidrug resistance protein ABC transporter family, partial [Populus trichocarpa]	65%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
386		14		85	0.993533
573	83			16	0.994512
574			16	83	0.994512
575	16			83	0.994512
576			16	83	0.994512
580		16	83		0.994512
582	83		16		0.994512
586		83	16		0.994512
587	83			16	0.994512
588		16		83	0.994512
590		16	83		0.994512
591	83		16		0.994512
594		83	16		0.994512
625	60	40			1.0
628		60	40		1.0
629		60	40		1.0
630	60			40	1.0
631	60	40			1.0
635	40	60			1.0
637		60	40		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain