SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36734

Length: 2544 nt

UniGene Fasta

>sp_v3.0_unigene36734
TCGTGACCTTGGCTGTCACTCAAACTCCCACATTTCGACTCAAAACAAATATCTGAAAAATACAGAAATACTTTCGGAAAATTATTTAAAAATTATGGAGAAGGTAAGCAGACAAACGGTGTGAAGTGGGCGGAGCTTACATGCAGCTAGCATTGTGATCATCGACATATTTTTCATATTTCATACACACACGTTTTCACATATTTCTTTGGGGATCGATAGACCTGCAGATTCGTAAGACTTGCAGGTTTCTTCGGCATCCTGAAAATCTGTAAAGAAAATGGAGACAATAAGTTTATTCAAGTCCTTTTACTCAGTTCGGGCCCCAGCTGTCGTGGCCACTTCGAGTGGCAATAACCCAAAGTCCTGCCATTCTAGTGGACTGAGCTATCCACTTAGAGGGTCAGCCAAAAGTGTCAGGAGCGCAAGCTGCAGCTTTTTGAGTGGAAGTGAGACCGATGCCTTCAGACATGCTGTTCGCGCGATTGGTAAGTCAAAATCTGGTGGCGGAGCCCTGAGCTGTACATGCGATCACCAGAACCAGAAGATCCTCATTGCAAACAGGGGGGAAATCGCTGTTCGCGTGATTCGGACAGCCCATGAAATGGGCATCCCATGTGTGGCAGTACACTCTACAGTAGATAGGCAAGCGCTCCATGTCCAAATTGCAGATGAGGCCGTGTGCATTGGAGAGGCACCAAGCAGTCAATCATATTTAGTGATACCAAATATTGTAGCAGCTGCAGTGAGCCGTGGTTGTACCATGTTACACCCTGGATATGGTTTTCTTTCTGAAAATGCTAGTTTTGTGGACATCTGTAAAGAGCATGGAATCAACTTTATTGGGCCAAATCCACATAGCATTCGTGTTATGGGTGACAAAGCAACAGCTCGGGAAACAATGAAAAAGGCTGGGGTTCCAACTGTACCAGGAAGTGATGGGATTTTAGAGTCAACAGAAGAGGCTATAAAAGTTGCTAATGAGATTGGGTTTCCAGTAATGATCAAGGCAACTGCAGGTGGTGGAGGTCGTGGAATGCGTTTGGCCAATGAGCCAGGAGAGTTTGTAAAATTATTACAGCAAGCCAAGAGTGAGGCAGGTGCAGCCTTTGGGAATGACGGCGTCTATTTGGAGAAGTACATAAAAAACCCTAGACATATTGAGTTCCAGATTCTTGCTGACAAACATGGTAATTGTATCCATTTTGGAGAGCGTGACTGCAGTATCCAGCGGAGGAATCAAAAGCTTCTAGAAGAAGCACCGTCTCCTGCTTTGACCCCCAAGCTAAGAAATGCCATGGGAAATGCTGCAATTGCAGCCGCTTTATCTATAGGATATATTGGGGTTGGCACCATTGAATTTCTTCTTGATGAAAGTGGTGACTTCTACTTCATGGAGATGAACACTAGGATCCAGGTGGAACATCCAATCACCGAAATGATTTCCTCAACTGATTTAATTGAGGAACAAATTCGTGTTGCATTAGGAGAGAAACTTCGGATGAAACAGGAAGATGTGGTGTTGAGAGGACACTCCATTGAGTGCAGAATCAATGCTGAGGATGCTTTCCAAGGATTTCGCCCAGGGCCAGGTAGGATAACAGGTTACTTGCCACCAGGAGGTCCCTTTGTGCGAATAGATAGCCACATTTATTCCGATTATGTAGTTCCTCCGAGCTATGACTCTCTATTAGGAAAGCTTATTGTCTGGGCACCTACTAGAGAGAAGGCAATCACGCGTATGCGAAGAGCTCTTAATGAAACTATTATTGTAGGAGTTCCTACCACAATTGACTATCATAAACTTATTCTAGAAACTCAGGACTTCAAGGATGGAAAAATTGATACAGCTTTCATTCCCAAACACGAAGAGGAGTTGGCTGCGCCTCATGATGTTGTGCAATTAACTGTACCCAATAAGAGTGTTGCTAAAGCAATTGCTTGAATTCAAAATTTGATGATGTGAGTTTAGTTATCAGGATTCGATTGCTTTCGCCACAGCAACAGGCCTTCAGAATCGTGGAGTCGCTCCTAATATTTTAGCCTATGATGGTGTATGCAGAAGCAAGTTAGTTAATAATTGACAAGCTTGTTTGGTTTTAAAGCCAATCTTGACATTGTTTAACTCCTGTGGTCGCATTTTTATTCCAGAGGTTATTATGTATTTGATCCAATATCATTGTTCCCGAAAATATGGCTTTCATGGCCCTATATGTTATACAGCATTCCAATCATGAATAAATTGAAACGATCCATTTATTTTAGTCAACTTTTGAAATCATTTATCAAAGAAACGTAGAAATCTACTGTTATTCATGACCTTATCTCTGCTAAAGAAGACTAATCCACAACAATATGAAAAGAAATGTGGGTAATTTGTTATGAAACGCCAACCAGCCATGTACCTTGATATTATGCTCCATTATATAAGCATATTTGTGCATCATTTACGAAAAAGTTGCGTGCCAATATACTAATATTGTCAGATGAACGTCGACATCATTTGAATTAGAAGCCAATGAGAAATTTATCCACTTTTATACT

Ace file of the UniGene sp_v3.0_unigene36734

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast biotin carboxylase [Gossypium hirsutum]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	PHYPADRAFT_113929;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	biotin binding	GO:0009374	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acetyl-CoA carboxylase, biotin carboxylase	IPR004549	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3	Biotin carboxylation domain	IPR011764	-	-
Sma3	Biotin carboxylase, C-terminal	IPR005482	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3		IPR013817	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G35360.3	CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit chr5:13584300-13588163 FORWARD LENGTH=555	77%
RefSeq	Arabidopsis thaliana	NP_198386.1	biotin carboxylase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002308127.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR39

Fln msg: Overlapping hits, possible frame ERROR between 917 and 902,

Fln protein: MVFFLKMLVLWTSVKSMESTLLGQIHIAFVLWVTKQQLGKxxxxxxxPTVPGSDGILESTEEAIKVANEIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQAKSEAGAAFGNDGVYLEKYIKNPRHIEFQILADKHGNCIHFGERDCSIQRRNQKLLEEAPSPALTPKLRNAMGNAAIAAALSIGYIGVGTIEFLLDESGDFYFMEMNTRIQVEHPITEMISSTDLIEEQIRVALGEKLRMKQEDVVLRGHSIECRINAEDAFQGFRPGPGRITGYLPPGGPFVRIDSHIYSDYVVPPSYDSLLGKLIVWAPTREKAITRMRRALNETIIVGVPTTIDYHKLILETQDFKDGKIDTAFIPKHEEELAAPHDVVQLTVPNKSVAKAIA*

Protein Length: 390

Fln nts: TCGTGACCTTGGCTGTCACTCAAACTCCCACATTTCGACTCAAAACAAATATCTGAAAAATACAGAAATACTTTCGGAAAATTATTTAAAAATTATGGAGAAGGTAAGCAGACAAACGGTGTGAAGTGGGCGGAGCTTACATGCAGCTAGCATTGTGATCATCGACATATTTTTCATATTTCATACACACACGTTTTCACATATTTCTTTGGGGATCGATAGACCTGCAGATTCGTAAGACTTGCAGGTTTCTTCGGCATCCTGAAAATCTGTAAAGAAAATGGAGACAATAAGTTTATTCAAGTCCTTTTACTCAGTTCGGGCCCCAGCTGTCGTGGCCACTTCGAGTGGCAATAACCCAAAGTCCTGCCATTCTAGTGGACTGAGCTATCCACTTAGAGGGTCAGCCAAAAGTGTCAGGAGCGCAAGCTGCAGCTTTTTGAGTGGAAGTGAGACCGATGCCTTCAGACATGCTGTTCGCGCGATTGGTAAGTCAAAATCTGGTGGCGGAGCCCTGAGCTGTACATGCGATCACCAGAACCAGAAGATCCTCATTGCAAACAGGGGGGAAATCGCTGTTCGCGTGATTCGGACAGCCCATGAAATGGGCATCCCATGTGTGGCAGTACACTCTACAGTAGATAGGCAAGCGCTCCATGTCCAAATTGCAGATGAGGCCGTGTGCATTGGAGAGGCACCAAGCAGTCAATCATATTTAGTGATACCAAATATTGTAGCAGCTGCAGTGAGCCGTGGTTGTACCATGTTACACCCTGGAT_-_ATGGTTTTCTTTCTGAAAATGCTAGTTTTGTGGACATCTGTAAAGAGCATGGAATCAACTTTATTGGGCCAAATCCACATAGCATTCGTGTTATGGGTGACAAAGCAACAGCTCGGGAAAxxxxxxxxxxxxxxxxxxxxxCCAACTGTACCAGGAAGTGATGGGATTTTAGAGTCAACAGAAGAGGCTATAAAAGTTGCTAATGAGATTGGGTTTCCAGTAATGATCAAGGCAACTGCAGGTGGTGGAGGTCGTGGAATGCGTTTGGCCAATGAGCCAGGAGAGTTTGTAAAATTATTACAGCAAGCCAAGAGTGAGGCAGGTGCAGCCTTTGGGAATGACGGCGTCTATTTGGAGAAGTACATAAAAAACCCTAGACATATTGAGTTCCAGATTCTTGCTGACAAACATGGTAATTGTATCCATTTTGGAGAGCGTGACTGCAGTATCCAGCGGAGGAATCAAAAGCTTCTAGAAGAAGCACCGTCTCCTGCTTTGACCCCCAAGCTAAGAAATGCCATGGGAAATGCTGCAATTGCAGCCGCTTTATCTATAGGATATATTGGGGTTGGCACCATTGAATTTCTTCTTGATGAAAGTGGTGACTTCTACTTCATGGAGATGAACACTAGGATCCAGGTGGAACATCCAATCACCGAAATGATTTCCTCAACTGATTTAATTGAGGAACAAATTCGTGTTGCATTAGGAGAGAAACTTCGGATGAAACAGGAAGATGTGGTGTTGAGAGGACACTCCATTGAGTGCAGAATCAATGCTGAGGATGCTTTCCAAGGATTTCGCCCAGGGCCAGGTAGGATAACAGGTTACTTGCCACCAGGAGGTCCCTTTGTGCGAATAGATAGCCACATTTATTCCGATTATGTAGTTCCTCCGAGCTATGACTCTCTATTAGGAAAGCTTATTGTCTGGGCACCTACTAGAGAGAAGGCAATCACGCGTATGCGAAGAGCTCTTAATGAAACTATTATTGTAGGAGTTCCTACCACAATTGACTATCATAAACTTATTCTAGAAACTCAGGACTTCAAGGATGGAAAAATTGATACAGCTTTCATTCCCAAACACGAAGAGGAGTTGGCTGCGCCTCATGATGTTGTGCAATTAACTGTACCCAATAAGAGTGTTGCTAAAGCAATTGCTTGA___ATTCAAAATTTGATGATGTGAGTTTAGTTATCAGGATTCGATTGCTTTCGCCACAGCAACAGGCCTTCAGAATCGTGGAGTCGCTCCTAATATTTTAGCCTATGATGGTGTATGCAGAAGCAAGTTAGTTAATAATTGACAAGCTTGTTTGGTTTTAAAGCCAATCTTGACATTGTTTAACTCCTGTGGTCGCATTTTTATTCCAGAGGTTATTATGTATTTGATCCAATATCATTGTTCCCGAAAATATGGCTTTCATGGCCCTATATGTTATACAGCATTCCAATCATGAATAAATTGAAACGATCCATTTATTTTAGTCAACTTTTGAAATCATTTATCAAAGAAACGTAGAAATCTACTGTTATTCATGACCTTATCTCTGCTAAAGAAGACTAATCCACAACAATATGAAAAGAAATGTGGGTAATTTGTTATGAAACGCCAACCAGCCATGTACCTTGATATTATGCTCCATTATATAAGCATATTTGTGCATCATTTACGAAAAAGTTGCGTGCCAATATACTAATATTGTCAGATGAACGTCGACATCATTTGAATTAGAAGCCAATGAGAAATTTATCCACTTTTATACT

Fln Alignment:

Contig36734___MVFFLKMLVLWTSVKSMESTLLGQIHIAFVLWVTKQQLGKQxxxxxVPTVPGSDGILESTEEAIKVANEIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQAKSEAGAAFGNDGVYLEKYIKNPRHIEFQILADKHGNCIHFGERDCSIQRRNQKLLEEAPSPALTPKLRNXXXXXXXXXXXXXXXXXVGTIEFLLDESGDFYFMEMNTRIQVEHPITEMISSTDLIEEQIRVALGEKLRMKQEDVVLRGHSIECRINAEDAFQGFRPGPGRITGYLPPGGPFVRIDSHIYSDYVVPPSYDSLLGKLIVWAPTREKAITRMRRALNETIIVGVPTTIDYHKLILETQDFKDGKIDTAFIPKHEEELAAPHDVVQLTVPNKSVAKAIA
B8LR39_______________MVFFLKMLVLWTSVKNMESTLLGQVQTAFVLWVTKQQLGKQxxxxxVPTVPGSDGILDSTEEAITVANQIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQAKSEAGAAFGNDGVYLEKYIKNPRHIEFQILADKHGNCIHFGERDCSIQRRNQKLLEEAPSPALTPKLRNAMGDAAVAAALSIGYVGVGTVEFLLDESGDFYFMEMNTRIQVEHPITEMISSTDLIEEQIRVALGEKLRMKQEDVVLRGHSIECRINAEDAFQGFRPGPGRITGYLPPGGPFVRMDSHIYSDYVVPPSYDSLLGKLIVWAPTREKAIARMQRALNETIIVGIPTTIDYHKLILETQDFKDGKIDTAFIPKHEEELASPQDAVQLTIPTKSVAKAIA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
297		16		83	0.994512
386	33		66		1.0
433	14		85		0.993533
457		33		66	1.0
465	11			88	0.923564
467		88	11		0.923564
468	88		11		0.923564
485			66	33	1.0
599	16	83			0.994512
603			83	16	0.994512
644			33	66	0.997452
998	80			20	0.995493
2021	75		25		1.0
2068	90		10		0.90298
2126	14			85	0.999981
2340			90	10	0.90298
2341	90		10		0.90298
2416	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain