SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36731

Length: 549 nt

UniGene Fasta

>sp_v3.0_unigene36731
AGGGTGGTAGGTGTATTCTTGGAGAATGGTACTCCTGAAGAAAACAAAGCTATCGCCAAATTAGCACGTGTGCAGCCTTTGGTCGAAAGCAAGGAGGAACTCATAGAGGATGGGCTGGCATTTGCTTCTAAGATATCCTCGGCTTTCACTTAATTCATCAGTTTGTTACATCACTGTTGGTCTCTTTTCACCTGGGAGATATCTGTTGCTTTAGTCTCTGCCTGAATTTTGTTGAGAGGTATTGGATTTTTAGTCAGGGTTTAGCTGCTTCATTACTAAATCAAACTTGTGCCATATTTTTTTCTCTTTCCTTCCTATTGCTGGGATTGCATCTTATTAAACAGCACTATATTATTATTCTAATGAAATGCTCTTAATTGCATTGCTCACTCCATTGTAACATTATATATGACCTTTAAAGTTAGTATTTGTCAGACCAGGAAGTAACTCCTCAATTGTAATCGTATTATTCGTTCAAGTTGTTCATTATTATATATAAGAGGGATGACTGTTCAAGTTACAATACTACCCGAATAGAACTACTACCTA

Ace file of the UniGene sp_v3.0_unigene36731

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Monodehydroascorbate reductase n=1 Tax=Rheum australe RepID=Q0GA76_RHEAU	-	-	1.0e-09	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Monodehydroascorbate reductase	-	-	1.153e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Monodehydroascorbate reductase (NADH).	EC:1.6.5.4	-	1.799e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		1.799e-17	%
Sma3	Metabolic pathways	01100		1.799e-17	%

Source	Gene names
Sma3	At3g09940; At5g03630; F17C15_50; GSVIVT00021644001; MDAR; MDHAR1; POPTRDRAFT_836268; RCOM_0014310; T22K18.25; mdhar1;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	monodehydroascorbate reductase (NADH) activity	GO:0016656	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	0.0	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G09940.1	MDHAR, ATMDAR3, MDAR3, MDAR2 monodehydroascorbate reductase chr3:3056501-3059103 REVERSE LENGTH=441	3.0e-11	65%
RefSeq	Arabidopsis thaliana	NP_001118607.1	monodehydroascorbate reductase (NADH) [Arabidopsis thaliana]	4.0e-11	65%
RefSeq	Populus trichocarpa	XP_002326252.1	predicted protein [Populus trichocarpa]	5.0e-12	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQT8

Fln msg: your sequence is shorter than subject: 51 - 434

Fln protein: RVVGVFLENGTPEENKAIAKLARVQPLVESKEELIEDGLAFASKISSAFT*

Protein Length: 52

Fln nts: AGGGTGGTAGGTGTATTCTTGGAGAATGGTACTCCTGAAGAAAACAAAGCTATCGCCAAATTAGCACGTGTGCAGCCTTTGGTCGAAAGCAAGGAGGAACTCATAGAGGATGGGCTGGCATTTGCTTCTAAGATATCCTCGGCTTTCACTTAA___TTCATCAGTTTGTTACATCACTGTTGGTCTCTTTTCACCTGGGAGATATCTGTTGCTTTAGTCTCTGCCTGAATTTTGTTGAGAGGTATTGGATTTTTAGTCAGGGTTTAGCTGCTTCATTACTAAATCAAACTTGTGCCATATTTTTTTCTCTTTCCTTCCTATTGCTGGGATTGCATCTTATTAAACAGCACTATATTATTATTCTAATGAAATGCTCTTAATTGCATTGCTCACTCCATTGTAACATTATATATGACCTTTAAAGTTAGTATTTGTCAGACCAGGAAGTAACTCCTCAATTGTAATCGTATTATTCGTTCAAGTTGTTCATTATTATATATAAGAGGGATGACTGTTCAAGTTACAATACTACCCGAATAGAACTACTACCTA

Fln Alignment:

Contig36731___RVVGVFLENGTPEENKAIAKLARVQPLVESKEELIEDGLAFASKI
C0PQT8_______________RVVGVFLENGTPEENKAIAKVARLKPLVESKEELIKDGLAFASKI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
351	75	25			0.996473
389	75		25		0.996473
414		66		33	0.997452
443	66		33		0.997452
473	33		66		0.997452
478	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain