SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36632

Length: 1117 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36632

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class IV chitinase Chia4-Pa1.3 n=8 Tax=Picea RepID=Q6WSS1_PICAB	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Class IV chitinase	-	-	1.319e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chitinase.	EC:3.2.1.14	-	2.394e-20	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		2.394e-20	%

Source	Gene names
Sma3	At2g43570; At2g43580; At2g43590; At2g43610; At2g43620; At3g54420; Bcchi; CHB4; CHI4; CHIV; CHN48; Ch4; Ch4A; Chi; Chi4; Chi4C; Chi4D; Cht; EP3; GSVIVT00034623001; GSVIVT00034626001; GSVIVT00034628001; GSVIVT00034629001; GSVIVT00034632001; GSVIVT0003463400

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43610.1	Chitinase family protein chr2:18088058-18089184 REVERSE LENGTH=281	51%
RefSeq	Arabidopsis thaliana	NP_181889.1	putative chitinase [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002326042.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLX3

Fln msg:

Fln protein: MASCNVSMSTRIGVLVVLVLLSAQVQVGSAQHCGCAKGQCCSQWGYCGTTKAYCGEGCQSGACYNKPPVSPAPTGTGVASIISSTFFNRIKADTSSACKGKAFYTYQGFITAANAFSTFGRTGTLEVQKRELAAFFANVARETGSLCYVEELSKPRYCTPSTVWPCQPGKSYYGRGPLQLTGNYNYGEAGKYLGINLLSNPDLVAQNPAIAFKTSIWYWAVYSNCQKAMTSSGGSGFAGTIRSINPGECGNPAYRSAVQSRVNYYEKFCSWLGVSPGTNLYC*

Protein Length: 284

Fln nts: ACTCTATCCAACCGGTTGAAATCTTGAATCTATAGCC_-_ATGGCGAGTTGCAATGTATCGATGTCCACGAGGATCGGAGTTTTAGTAGTGCTAGTGTTACTTTCAGCCCAAGTGCAAGTGGGCTCTGCCCAACACTGCGGGTGTGCTAAGGGACAGTGCTGCAGTCAATGGGGATATTGTGGAACAACGAAAGCTTACTGCGGGGAGGGCTGCCAAAGCGGGGCGTGCTACAATAAGCCTCCCGTGTCTCCTGCTCCTACTGGAACAGGCGTTGCATCTATAATTTCCAGCACATTTTTTAACCGCATCAAGGCAGATACCTCCAGTGCTTGCAAAGGGAAGGCGTTTTATACTTATCAAGGGTTTATCACGGCAGCCAATGCCTTCTCCACGTTCGGTCGCACTGGAACTCTTGAAGTTCAAAAGAGGGAGCTGGCTGCATTCTTTGCCAACGTCGCTCGCGAGACTGGAAGTCTCTGCTATGTGGAAGAACTAAGCAAACCGCGCTACTGTACACCGTCGACAGTTTGGCCCTGTCAGCCCGGCAAGAGCTATTATGGGCGTGGGCCGCTGCAACTCACTGGGAACTACAACTATGGAGAAGCGGGAAAGTATTTGGGAATCAATCTGCTGAGCAATCCAGACTTGGTGGCACAGAACCCAGCCATTGCTTTCAAGACATCTATATGGTATTGGGCTGTGTACAGCAATTGCCAGAAAGCGATGACCTCCAGCGGGGGTAGCGGATTCGCGGGAACAATTCGAAGTATCAACCCGGGAGAGTGCGGGAATCCTGCCTATCGTAGTGCAGTGCAAAGTCGGGTGAATTATTACGAGAAGTTCTGCTCATGGCTGGGGGTAAGTCCCGGGACCAACCTCTACTGTTGA___ATATCGATGCATTTTCATTCTCAGTGACTAATGTAGAAATAAAGCTTGTACGAAGCTACAATAAATGTCACAGCGACTATGTAAAGGCAGTGTAGTGCCAGGCACAGTATCTGGAGTTAATGTATTGGCTCGTCAATGCAGTAAGCTATTGCTTTTCTCACATATGGATTCTTCACACTGCTTGTCAAAATGAACTCAGTCAATTAATTTAGGATGGTGTGTTAATTCTGG

Fln Alignment:

Contig36632___SAQHCGCAKGQCCSQWGYCGTTKAYCGEGCQSGACYNKPPVSPAPTGTGVASIISSTFFNRIKADTSSACKGKAFYTYQGFITAANAFSTFGRTGTLEVQKRELAAFFANVARETGSLCYVEELSKP-RYCTPSTVWPCQPGKSYYGRGPLQLTGNYNYGEAGKYLGINLLSNPDLVAQNPAIAFKTSIWYWAVYSNCQKAMTSSGGSGFAGTIRSINPGECGNPAYRSAVQSRVNYYEKFCSWLGVSPGTNLYC
A9NLX3_______________NAQNCGCASGVCCSQYGYCGTTSAYCGKGCKSGPCYSSGGGSPSAGGGSVGGIISQSFFNGLAGGAGSSCEGKGFYTYNAFIAAANAFSGFGTTGSNDVKKRELAAFFANVMHETGGLCYINERNPPMKYCQSSSMWPCNSGKSYHGRGPLQLSWNYNYGAAGKSIGFDGLNNPEKVGQDPTTSFKTAVWFWMKNSNCHSAITS--GQGFGGTIKAINSMEC-NGGNSGEVSSRVNYYKKICSQLGVDPGANVSC

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
8		83		16	0.994512
970	95	4			0.995482
984		4	95		0.995881
1029		4		95	0.997218
1045		9		90	0.999872
1048		86		13	0.999973
1062	90			10	0.90298
1097		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain